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Id | Title * | Authors * | Abstract * | Picture * | Thematic fields * | Recommender | Reviewers | Submission date | |
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29 Aug 2023
Provision of essential resources as a persistence strategy in food websMichael Raatz https://doi.org/10.1101/2023.01.27.525839High-order interactions in food webs may strongly impact persistence of speciesRecommended by Cédric Gaucherel based on reviews by Jean-Christophe POGGIALE and 1 anonymous reviewerMichael Raatz (2023) provides here a relevant exploration of higher-order interactions, i.e. interactions involving more than two related species (Terry et al. 2019), in the case of food web and competition interactions. More precisely, he shows by modeling that essential resources may significantly mediate focal species' persistence. Simultaneously, the provision of essential resources may strongly affect the resulting community structure, by driving to extinction first the predator and then, depending on the higher-order interaction, potentially also the associated competitor. Today, all ecologists should be aware of the potential effects of high-order interactions on species' (and likely on ecosystem's) fate (Golubski et al. 2016, Grilli et al. 2017). Yet, we should soon be prepared to include any high-order interaction into any interaction network (i.e. not only between species, but also between species and abiotic components, and between biotic, anthropogenic and abiotic components too). For this purpose, we will need innovative approaches such as hypergraphs (Golubski et al. 2016) and discrete-event models (Gaucherel and Pommereau 2019, Thomas et al. 2022) able to manage highly complex interactions, with numerous interacting components and variables. Such a rigorous study is a necessary and preliminary step in taking into account such a higher complexity. References Gaucherel, C. and F. Pommereau. 2019. Using discrete systems to exhaustively characterize the dynamics of an integrated ecosystem. Methods in Ecology and Evolution 00:1–13. https://doi.org/10.1111/2041-210X.13242 Golubski, A. J., E. E. Westlund, J. Vandermeer, and M. Pascual. 2016. Ecological Networks over the Edge: Hypergraph Trait-Mediated Indirect Interaction (TMII) Structure trends in Ecology & Evolution 31:344-354. https://doi.org/10.1016/j.tree.2016.02.006 Grilli, J., G. Barabas, M. J. Michalska-Smith, and S. Allesina. 2017. Higher-order interactions stabilize dynamics in competitive network models. Nature 548:210-213. https://doi.org/10.1038/nature23273 Raatz, M. 2023. Provision of essential resources as a persistence strategy in food webs. bioRxiv, ver. 3 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2023.01.27.525839 Terry, J. C. D., R. J. Morris, and M. B. Bonsall. 2019. Interaction modifications lead to greater robustness than pairwise non-trophic effects in food webs. Journal of Animal Ecology 88:1732-1742. https://doi.org/10.1111/1365-2656.13057 Thomas, C., M. Cosme, C. Gaucherel, and F. Pommereau. 2022. Model-checking ecological state-transition graphs. PLoS Computational Biology 18:e1009657. https://doi.org/10.1371/journal.pcbi.1009657 | Provision of essential resources as a persistence strategy in food webs | Michael Raatz | <p style="text-align: justify;">Pairwise interactions in food webs, including those between predator and prey are often modulated by a third species. Such higher-order interactions are important structural components of natural food webs that can ... | Biodiversity, Coexistence, Competition, Ecological stoichiometry, Food webs, Interaction networks, Theoretical ecology | Cédric Gaucherel | 2023-02-23 17:48:26 | View | ||
28 Aug 2023
Implementing a rapid geographic range expansion - the role of behavior changesLogan CJ, McCune KB, LeGrande-Rolls C, Marfori Z, Hubbard J, Lukas D https://doi.org/10.32942/X2N30JBehavioral changes in the rapid geographic expansion of the great-tailed grackleRecommended by Esther Sebastián González based on reviews by Francois-Xavier Dechaume-Moncharmont, Pizza Ka Yee Chow and 1 anonymous reviewerWhile many species' populations are declining, primarily due to human-related impacts (McKnee et al., 2014), certain species have thrived by utilizing human-influenced environments, leading to their population expansion (Muñoz & Real, 2006). In this context, the capacity to adapt and modify behaviors in response to new surroundings is believed to play a crucial role in facilitating species' spread to novel areas (Duckworth & Badyaev, 2007). For example, an increase in innovative behaviors within recently established communities could aid in discovering previously untapped food resources, while a decrease in exploration might reduce the likelihood of encountering dangers in unfamiliar territories (e.g., Griffin et al., 2016). To investigate the contribution of these behaviors to rapid range expansions, it is essential to directly measure and compare behaviors in various populations of the species. The study conducted by Logan et al. (2023) aims to comprehend the role of behavioral changes in the range expansion of great-tailed grackles (Quiscalus mexicanus). To achieve this, the researchers compared the prevalence of specific behaviors at both the expansion's edge and its middle. Great-tailed grackles were chosen as an excellent model due to their behavioral adaptability, rapid geographic expansion, and their association with human-modified environments. The authors carried out a series of experiments in captivity using wild-caught individuals, following a detailed protocol. The study successfully identified differences in two of the studied behavioral traits: persistence (individuals participated in a larger proportion of trials) and flexibility variance (a component of the species' behavioral flexibility, indicating a higher chance that at least some individuals in the population could be more flexible). Notably, individuals at the edge of the population exhibited higher values of persistence and flexibility, suggesting that these behavioral traits might be contributing factors to the species' expansion. Overall, the study by Logan et al. (2023) is an excellent example of the importance of behavioral flexibility and other related behaviors in the process of species' range expansion and the significance of studying these behaviors across different populations to gain a better understanding of their role in the expansion process. Finally, it is important to underline that this study is part of a pre-registration that received an In Principle Recommendation in PCI Ecology (Sebastián-González 2020) where objectives, methodology, and expected results were described in detail. The authors have identified any deviation from the original pre-registration and thoroughly explained the reasons for their deviations, which were very clear. References Duckworth, R. A., & Badyaev, A. V. (2007). Coupling of dispersal and aggression facilitates the rapid range expansion of a passerine bird. Proceedings of the National Academy of Sciences, 104(38), 15017-15022. https://doi.org/10.1073/pnas.0706174104 Griffin, A.S., Guez, D., Federspiel, I., Diquelou, M., Lermite, F. (2016). Invading new environments: A mechanistic framework linking motor diversity and cognition to establishment success. Biological Invasions and Animal Behaviour, 26e46. https://doi.org/10.1017/CBO9781139939492.004 Logan, C. J., McCune, K., LeGrande-Rolls, C., Marfori, Z., Hubbard, J., Lukas, D. 2023. Implementing a rapid geographic range expansion - the role of behavior changes. EcoEvoRxiv, ver. 3 peer-reviewed and recommended by PCI Ecology. https://doi.org/10.32942/X2N30J McKee, J. K., Sciulli, P. W., Fooce, C. D., & Waite, T. A. (2004). Forecasting global biodiversity threats associated with human population growth. Biological Conservation, 115(1), 161-164. https://doi.org/10.1016/S0006-3207(03)00099-5 Muñoz, A. R., & Real, R. (2006). Assessing the potential range expansion of the exotic monk parakeet in Spain. Diversity and Distributions, 12(6), 656-665. https://doi.org/10.1111/j.1472-4642.2006.00272.x Sebastián González, E. (2020) The role of behavior and habitat availability on species geographic expansion. Peer Community in Ecology, 100062. https://doi.org/10.24072/pci.ecology.100062. Reviewers: Caroline Nieberding, Tim Parker, and Pizza Ka Yee Chow. | Implementing a rapid geographic range expansion - the role of behavior changes | Logan CJ, McCune KB, LeGrande-Rolls C, Marfori Z, Hubbard J, Lukas D | <p>It is generally thought that behavioral flexibility, the ability to change behavior when circumstances change, plays an important role in the ability of species to rapidly expand their geographic range. Great-tailed grackles (<em>Quiscalus mexi... | Behaviour & Ethology, Preregistrations, Zoology | Esther Sebastián González | 2023-04-12 11:00:42 | View | ||
11 Aug 2023
Implementing Code Review in the Scientific Workflow: Insights from Ecology and Evolutionary BiologyEdward Ivimey-Cook, Joel Pick, Kevin Bairos-Novak, Antica Culina, Elliot Gould, Matthew Grainger, Benjamin Marshall, David Moreau, Matthieu Paquet, Raphaël Royauté, Alfredo Sanchez-Tojar, Inês Silva, Saras Windecker https://doi.org/10.32942/X2CG64A handy “How to” review code for ecologists and evolutionary biologistsRecommended by Corina Logan based on reviews by Serena Caplins and 1 anonymous reviewerIvimey Cook et al. (2023) provide a concise and useful “How to” review code for researchers in the fields of ecology and evolutionary biology, where the systematic review of code is not yet standard practice during the peer review of articles. Consequently, this article is full of tips for authors on how to make their code easier to review. This handy article applies not only to ecology and evolutionary biology, but to many fields that are learning how to make code more reproducible and shareable. Taking this step toward transparency is key to improving research rigor (Brito et al. 2020) and is a necessary step in helping make research trustable by the public (Rosman et al. 2022). References Brito, J. J., Li, J., Moore, J. H., Greene, C. S., Nogoy, N. A., Garmire, L. X., & Mangul, S. (2020). Recommendations to enhance rigor and reproducibility in biomedical research. GigaScience, 9(6), giaa056. https://doi.org/10.1093/gigascience/giaa056 Ivimey-Cook, E. R., Pick, J. L., Bairos-Novak, K., Culina, A., Gould, E., Grainger, M., Marshall, B., Moreau, D., Paquet, M., Royauté, R., Sanchez-Tojar, A., Silva, I., Windecker, S. (2023). Implementing Code Review in the Scientific Workflow: Insights from Ecology and Evolutionary Biology. EcoEvoRxiv, ver 5 peer-reviewed and recommended by Peer Community In Ecology. https://doi.org/10.32942/X2CG64 Rosman, T., Bosnjak, M., Silber, H., Koßmann, J., & Heycke, T. (2022). Open science and public trust in science: Results from two studies. Public Understanding of Science, 31(8), 1046-1062. https://doi.org/10.1177/09636625221100686 | Implementing Code Review in the Scientific Workflow: Insights from Ecology and Evolutionary Biology | Edward Ivimey-Cook, Joel Pick, Kevin Bairos-Novak, Antica Culina, Elliot Gould, Matthew Grainger, Benjamin Marshall, David Moreau, Matthieu Paquet, Raphaël Royauté, Alfredo Sanchez-Tojar, Inês Silva, Saras Windecker | <p>Code review increases reliability and improves reproducibility of research. As such, code review is an inevitable step in software development and is common in fields such as computer science. However, despite its importance, code review is not... | Meta-analyses, Statistical ecology | Corina Logan | 2023-05-19 15:54:01 | View | ||
10 Aug 2023
Coexistence of many species under a random competition-colonization trade-offZachary R. Miller, Maxime Clenet, Katja Della Libera, François Massol, Stefano Allesina https://doi.org/10.1101/2023.03.23.533867Assembly in metacommunities driven by a competition-colonization tradeoff: more species in, more species outRecommended by Frederik De Laender based on reviews by Canan Karakoç and 1 anonymous reviewerThe output of a community model depends on how you set its parameters. Thus, analyses of specific parameter settings hardwire the results to specific ecological scenarios. Because more general answers are often of interest, one tradition is to give models a statistical treatment: one summarizes how model parameters vary across species, and then predicts how changing the summary, instead of the individual parameters themselves, would change model output. Arguably the best-known example is the work initiated by May, showing that the properties of a community matrix, encoding effects species have on each other near their equilibrium, determine stability (1,2). More recently, this statistical treatment has also been applied to one of community ecology’s more prickly and slippery subjects: community assembly, which deals with the question “Given some regional species pool, which species will be able to persist together at some local ecosystem?”. Summaries of how species grow and interact in this regional pool predict the fraction of survivors and their relative abundances, the kind of dynamics, and various kinds of stability (3,4). One common characteristic of such statistical treatments is the assumption of disorder: if species do not interact in too structured ways, simple and therefore powerful predictions ensue that often stand up to scrutiny in relatively ordered systems. 2. Allesina, S. & Tang, S. (2015). The stability–complexity relationship at age 40: a random matrix perspective. Population Ecology, 57, 63–75. https://doi.org/10.1007/s10144-014-0471-0 3. Bunin, G. (2016). Interaction patterns and diversity in assembled ecological communities. Preprint at http://arxiv.org/abs/1607.04734. 5. Miller, Z. R., Clenet, M., Libera, K. D., Massol, F. & Allesina, S. (2023). Coexistence of many species under a random competition-colonization trade-off. bioRxiv 2023.03.23.533867, ver 3 peer-reviewed and recommended by PCI Ecology. https://doi.org/10.1101/2023.03.23.533867 6. Serván, C. A. & Allesina, S. (2021). Tractable models of ecological assembly. Ecology Letters, 24, 1029–1037. https://doi.org/10.1111/ele.13702 | Coexistence of many species under a random competition-colonization trade-off | Zachary R. Miller, Maxime Clenet, Katja Della Libera, François Massol, Stefano Allesina | <p>The competition-colonization trade-off is a well-studied coexistence mechanism for metacommunities. In this setting, it is believed that coexistence of all species requires their traits to satisfy restrictive conditions limiting their similarit... | Biodiversity, Coexistence, Colonization, Community ecology, Competition, Population ecology, Spatial ecology, Metacommunities & Metapopulations, Theoretical ecology | Frederik De Laender | 2023-03-30 20:42:48 | View | ||
07 Aug 2023
Being a tree crop increases the odds of experiencing yield declines irrespective of pollinator dependenceMarcelo A. Aizen, Gabriela Gleiser, Thomas Kitzberger, and Rubén Milla https://doi.org/10.1101/2023.04.27.538617The complexities of understanding why yield is decliningRecommended by Ignasi Bartomeus based on reviews by Nicolas Deguines and 1 anonymous reviewerDespite the repeated mantra that "correlation does not imply causation", ecological studies not amenable to experimental settings often rely on correlational patterns to infer the causes of observed patterns. In this context, it's of paramount importance to build a plausible hypothesis and take into account potential confounding factors. The paper by Aizen and collaborators (2023) is a beautiful example of how properly unveil the complexities of an intriguing pattern: The decline in yield of some crops over the last few decades. This is an outstanding question to solve given the need to feed a growing population without destroying the environment, for example by increasing the area under cultivation. Previous studies suggested that pollinator-dependent crops were more susceptible to suffering yield declines than non-pollinator-dependent crops (Garibaldi et al 2011). Given the actual population declines of some pollinators, especially in agricultural areas, this correlative evidence was quite appealing to be interpreted as a causal effect. However, as elegantly shown by Aizen and colleagues in this paper, this first analysis did not account for other alternative explanations, such as the effect of climate change on other plant life-history traits correlated with pollinator dependence. Plant life-history traits do not vary independently. For example, trees are more likely to be pollinator-dependent than herbs (Lanuza et al 2023), which can be an important confounding factor in the analysis. With an elegant analysis and an impressive global dataset, this paper shows that the declining trend in the yield of some crops is most likely associated with their life form than with their dependence on pollinators. This does not imply that pollinators are not important for crop yield, but that the decline in their populations is not leaving a clear imprint in the global yield production trends once accounted for the technological and agronomic improvements. All in all, this paper makes a key contribution to food security by elucidating the factors beyond declining yield trends, and is a brave example of how science can self-correct itself as new knowledge emerges. References Aizen, M.A., Gleiser, G., Kitzberger T. and Milla R. 2023. Being A Tree Crop Increases the Odds of Experiencing Yield Declines Irrespective of Pollinator Dependence. bioRxiv, 2023.04.27.538617, ver 2, peer-reviewed and recommended by PCI Ecology. https://doi.org/10.1101/2023.04.27.538617 Lanuza, J.B., Rader, R., Stavert, J., Kendall, L.K., Saunders, M.E. and Bartomeus, I. 2023. Covariation among reproductive traits in flowering plants shapes their interactions with pollinators. Functional Ecology 37: 2072-2084. https://doi.org/10.1111/1365-2435.14340 Garibaldi, L.A., Aizen, M.A., Klein, A.M., Cunningham, S.A. and Harder, L.D. 2011. Global growth and stability of agricultural yield decrease with pollinator dependence. Proceedings of the National Academy of Sciences, 108: 5909-5914. https://doi.org/10.1073/pnas.1012431108 | Being a tree crop increases the odds of experiencing yield declines irrespective of pollinator dependence | Marcelo A. Aizen, Gabriela Gleiser, Thomas Kitzberger, and Rubén Milla | <p>Crop yields, i.e., harvestable production per unit of cropland area, are in decline for a number of crops and regions, but the drivers of this process are poorly known. Global decreases in pollinator abundance and diversity have been proposed a... | Agroecology, Climate change, Community ecology, Demography, Facilitation & Mutualism, Life history, Phenotypic plasticity, Pollination, Terrestrial ecology | Ignasi Bartomeus | 2023-05-02 18:54:44 | View | ||
07 Aug 2023
Heather pollen is not necessarily a healthy diet for bumble beesClément Tourbez, Irène Semay, Apolline Michel, Denis Michez, Pascal Gerbaux, Antoine Gekière, Maryse Vanderplanck https://doi.org/10.5281/zenodo.8192036The importance of understanding bee nutritionRecommended by Ignasi Bartomeus based on reviews by Cristina Botías and 1 anonymous reviewerContrasting with the great alarm on bee declines, it is astonishing how little basic biology we know about bees, including on abundant and widespread species that are becoming model species. Plant-pollinator relationships are one of the cornerstones of bee ecology, and researchers are increasingly documenting bees' diets. However, we rarely know which effects feeding on different flowers has on bees' health. This paper (Tourbez et al. 2023) uses an elegant experimental setting to test the effect of heather pollen on bumblebees' (Bombus terrestris) reproductive success. This is a timely question as heather is frequently used by bumblebees, and its nectar has been reported to reduce parasite infections. In fact, it has been suggested that bumblebees can medicate themselves when infected (Richardson et al. 2014), and the pollen of some Asteraceae has been shown to help them fight parasites (Gekière et al. 2022). The starting hypothesis is that heather pollen contains flavonoids that might have a similar effect. Unfortunately, Tourbez and collaborators do not support this hypothesis, showing a negative effect of heather pollen, in particular its flavonoids, in bumblebees offspring, and an increase in parasite loads when fed on flavonoids. This is important because it challenges the idea that many pollen and nectar chemical compounds might have a medicinal use, and force us to critically analyze the effect of chemical compounds in each particular case. The results open several questions, such as why bumblebees collect heather pollen, or in which concentrations or pollen mixes it is deleterious. A limitation of the study is that it uses micro-colonies, and extrapolating this to real-world conditions is always complex. Understanding bee declines require a holistic approach starting with bee physiology and scaling up to multispecies population dynamics. References Gekière, A., Semay, I., Gérard, M., Michez, D., Gerbaux, P., & Vanderplanck, M. 2022. Poison or Potion: Effects of Sunflower Phenolamides on Bumble Bees and Their Gut Parasite. Biology, 11(4), 545. https://doi.org/10.3390/biology11040545 Richardson, L.L., Adler, L.S., Leonard, A.S., Andicoechea, J., Regan, K.H., Anthony, W.E., Manson, J.S., & Irwin, R.E. 2015. Secondary metabolites in floral nectar reduce parasite infections in bumblebees. Proceedings of the Royal Society of London B: Biological Sciences 282 (1803), 20142471. https://doi.org/10.1098/rspb.2014.2471 Tourbez, C., Semay, I., Michel, A., Michez, D., Gerbaux, P., Gekière A. & Vanderplanck, M. 2023. Heather pollen is not necessarily a healthy diet for bumble bees. Zenodo, ver 3, reviewed and recommended by PCI Ecology. https://doi.org/10.5281/zenodo.8192036 | Heather pollen is not necessarily a healthy diet for bumble bees | Clément Tourbez, Irène Semay, Apolline Michel, Denis Michez, Pascal Gerbaux, Antoine Gekière, Maryse Vanderplanck | <p>There is evidence that specialised metabolites of flowering plants occur in both vegetative parts and floral resources (i.e., pollen and nectar), exposing pollinators to their biological activities. While such metabolites may be toxic to bees, ... | Botany, Chemical ecology, Host-parasite interactions, Pollination, Zoology | Ignasi Bartomeus | 2023-04-10 21:22:34 | View | ||
15 Jul 2023
Evolution of dispersal and the maintenance of fragmented metapopulationsBasile Finand, Thibaud Monnin, Nicolas Loeuille https://doi.org/10.1101/2022.06.08.495260The spatial dynamics of habitat fragmentation drives the evolution of dispersal and metapopulation persistenceRecommended by Frédéric Guichard based on reviews by Eva Kisdi, David Murray-Stoker, Shripad Tuljapurkar and 1 anonymous reviewerThe persistence of populations facing the destruction of their habitat is a multifaceted question that has mobilized theoreticians and empiricists alike for decades. As an ecological question, persistence has been studied as the spatial rescue of populations via dispersal into remaining suitable habitats. The spatial aggregation of habitat destruction has been a key component of these studies, and it has been applied to the problem of coexistence by integrating competition-colonization tradeoffs. There is a rich ecological literature on this topic, both from theoretical and field studies (Fahrig 2003). The relationship between life-history strategies of species and their resilience to spatially structured habitat fragmentation is also an important component of conservation strategies through the management of land use, networks of protected areas, and the creation of corridors. In the context of environmental change, the ability of species to adapt to changes in landscape configuration and availability can be treated as an eco-evolutionary process by considering the possibility of evolutionary rescue (Heino and Hanski 2001; Bell 2017). However, eco-evolutionary dynamics considering spatially structured changes in landscapes and life-history tradeoffs remains an outstanding question. Finand et al. (2023) formulate the problem of persistence in fragmented landscapes over evolutionary time scales by studying models for the evolution of dispersal in relation to habitat fragmentation and spatial aggregation. Their simulations were conducted on a spatial grid where individuals can colonize suitable patch as a function of their competitive rank that decreases as a function of their (ii) dispersal distance trait. Simulations were run under fixed habitat fragmentation (proportion of unsuitable habitat) and aggregation, and with an explicit rate of habitat destruction to study evolutionary rescue. Their results reveal a balance between the selection for high dispersal under increasing habitat fragmentation and selection for lower dispersal in response to habitat aggregation. This balance leads to the coexistence of polymorphic dispersal strategies in highly aggregated landscapes with low fragmentation where high dispersers inhabit aggregated habitats while low dispersers are found in isolated habitats. The authors then integrate the spatial rescue mechanism to the problem of evolutionary rescue in response to temporally increasing fragmentation. There they show how rapid evolution allows for evolutionary rescue through the evolution of high dispersal. They also show the limits to this evolutionary rescue to cases where both aggregation and fragmentation are not too high. Interestingly, habitat aggregation prevents evolutionary rescue by directly affecting the evolutionary potential of dispersal. The study is based on simple scenarios that ignore the complexity of relationships between dispersal, landscape properties, and species interactions. This simplicity is the strength of the study, revealing basic mechanisms that can now be tested against other life-history tradeoffs and species interactions. Finand et al. (2023) provide a novel foundation for the study of eco-evolutionary dynamics in metacommunities exposed to spatially structured habitat destruction. They point to important assumptions that must be made along the way, including the relationships between dispersal distance and fecundity (they assume a positive relationship), and the nature of life-history tradeoffs between dispersal rate and local competitive abilities.
Bell, G. 2017. Evolutionary Rescue. Annual Review of Ecology, Evolution, and Systematics 48:605–627. https://doi.org/10.1146/annurev-ecolsys-110316-023011 | Evolution of dispersal and the maintenance of fragmented metapopulations | Basile Finand, Thibaud Monnin, Nicolas Loeuille | <p>Because it affects dispersal risk and modifies competition levels, habitat fragmentation directly constrains dispersal evolution. When dispersal is traded-off against competitive ability, increased fragmentation is often expected to select high... | Colonization, Competition, Dispersal & Migration, Eco-evolutionary dynamics, Spatial ecology, Metacommunities & Metapopulations, Theoretical ecology | Frédéric Guichard | 2022-06-10 13:51:15 | View | ||
14 Jul 2023
Field margins as substitute habitat for the conservation of birds in agricultural wetlandsMallet Pierre, Béchet Arnaud, Sirami Clélia, Mesléard François, Blanchon Thomas, Calatayud François, Dagonet Thomas, Gaget Elie, Leray Carole, Galewski Thomas https://doi.org/10.1101/2022.05.05.490780Searching for conservation opportunities at the marginsRecommended by Ana S. L. Rodrigues based on reviews by Scott Wilson and Elena D ConcepciónIn a progressively human-dominated planet (Venter et al., 2016), the fate of many species will depend on the extent to which they can persist in anthropogenic landscapes. In Western Europe, where only small areas of primary habitat remain (e.g. Sabatini et al., 2018), semi-natural areas are crucial habitats to many native species, yet they are threatened by the expansion of human activities, including agricultural expansion and intensification (Rigal et al., 2023). A new study by Mallet and colleagues (Mallet et al., 2023) investigates the extent to which bird species in the Camargue region are able to use the margins of agricultural fields as substitutes for their preferred semi-natural habitats. Located in the delta of the Rhône River in Southern France, the Camargue is internationally recognized for its biodiversity value, classified as a Biosphere Reserve by UNESCO and as a Wetland of International Importance under the Ramsar Convention (IUCN & UN-WCMC, 2023). Mallet and colleagues tested three specific hypotheses: that grass strips (grassy field boundaries, including grassy tracks or dirt roads used for moving agricultural machinery) can function as substitute habitats for grassland species; that reed strips along drainage ditches (common in the rice paddy landscapes of the Camargue) can function as substitute habitats to wetland species; and that hedgerows can function as substitute habitats to species that favour woodland edges. They did so by measuring how the local abundances of 14 bird species (nine typical of forest edges, 3 of grasslands, and two of reedbeds) respond to increasing coverage of either the three types of field margins or of the three types of semi-natural habitat. This is an elegant study design, yet – as is often the case with real field data – results are not as simple as expected. Indeed, for most species (11 out of 14) local abundances did not increase significantly with the area of their supposed primary habitat, undermining the assumption that they are strongly associated with (or dependent on) those habitats. Among the three species that did respond positively to the area of their primary habitat, one (a forest edge species) responded positively but not significantly to the area of field margins (hedgerows), providing weak evidence to the habitat compensation hypothesis. For the other two (grassland and a wetland species), abundance responded even more strongly to the area of field margins (grass and reed strips, respectively) than to the primary habitat, suggesting that the field margins are not so much a substitute but valuable habitats in their own right. It would have been good conservation news if field margins were found to be suitable habitat substitutes to semi-natural habitats, or at least reasonable approximations, to most species. Given that these margins have functional roles in agricultural landscapes (marking boundaries, access areas, water drainage), they could constitute good win-win solutions for reconciling biodiversity conservation with agricultural production. Alas, the results are more complicated than that, with wide variation in species responses that could not have been predicted from presumed habitat affinities. These results illustrate the challenges of conservation practice in complex landscapes formed by mosaics of variable land use types. With species not necessarily falling neatly into habitat guilds, it becomes even more challenging to plan strategically how to manage landscapes to optimize their conservation. The results presented here suggest that species’ abundances may be responding to landscape variables not taken into account in the analyses, such as connectivity between habitat patches, or maybe positive and negative edge effects between land use types. That such uncertainties remain even in a well-studied region as the Camargue, and for such a well-studied taxon such as birds, only demonstrates the continued importance of rigorous field studies testing explicit hypotheses such as this one by Mallet and colleagues. References IUCN, & UN-WCMC (2023). Protected Planet. Protected Planet. https://www.protectedplanet.net/en Mallet, P., Béchet, A., Sirami, C., Mesléard, F., Blanchon, T., Calatayud, F., Dagonet, T., Gaget, E., Leray, C., & Galewski, T. (2023). Field margins as substitute habitat for the conservation of birds in agricultural wetlands. bioRxiv, 2022.05.05.490780, ver. 3 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.05.05.490780 Rigal, S., Dakos, V., Alonso, H., Auniņš, A., Benkő, Z., Brotons, L., Chodkiewicz, T., Chylarecki, P., de Carli, E., del Moral, J. C. et al. (2023). Farmland practices are driving bird population decline across Europe. Proceedings of the National Academy of Sciences, 120, e2216573120. https://doi.org/10.1073/pnas.2216573120 Sabatini, F. M., Burrascano, S., Keeton, W. S., Levers, C., Lindner, M., Pötzschner, F., Verkerk, P. J., Bauhus, J., Buchwald, E., Chaskovsky, O., Debaive, N. et al. (2018). Where are Europe’s last primary forests? Diversity and Distributions, 24, 1426–1439. https://doi.org/10.1111/ddi.12778 Venter, O., Sanderson, E. W., Magrach, A., Allan, J. R., Beher, J., Jones, K. R., Possingham, H. P., Laurance, W. F., Wood, P., Fekete, B. M., Levy, M. A., & Watson, J. E. M. (2016). Sixteen years of change in the global terrestrial human footprint and implications for biodiversity conservation. Nature Communications, 7, 12558. https://doi.org/10.1038/ncomms12558 | Field margins as substitute habitat for the conservation of birds in agricultural wetlands | Mallet Pierre, Béchet Arnaud, Sirami Clélia, Mesléard François, Blanchon Thomas, Calatayud François, Dagonet Thomas, Gaget Elie, Leray Carole, Galewski Thomas | <p style="text-align: justify;">Breeding birds in agricultural landscapes have declined considerably since the 1950s and the beginning of agricultural intensification in Europe. Given the increasing pressure on agricultural land, it is necessary t... | Agroecology, Biodiversity, Conservation biology, Landscape ecology | Ana S. L. Rodrigues | 2022-05-09 10:48:49 | View | ||
13 Jul 2023
Parasites make hosts more profitable but less available to predatorsLoïc Prosnier, Nicolas Loeuille, Florence D. Hulot, David Renault, Christophe Piscart, Baptiste Bicocchi, Muriel Deparis, Matthieu Lam, Vincent Médoc https://doi.org/10.1101/2022.02.08.479552Indirect effects of parasitism include increased profitability of prey to optimal foragersRecommended by Luis Schiesari based on reviews by Thierry DE MEEUS and Eglantine Mathieu-BégnéEven though all living organisms are, at the same time, involved in host-parasite interactions and embedded in complex food webs, the indirect effects of parasitism are only beginning to be unveiled. Prosnier et al. investigated the direct and indirect effects of parasitism making use of a very interesting biological system comprising the freshwater zooplankton Daphnia magna and its highly specific parasite, the iridovirus DIV-1 (Daphnia-iridescent virus 1). Daphnia are typically semitransparent, but once infected develop a white phenotype with a characteristic iridescent shine due to the enlargement of white fat cells. In a combination of infection trials and comparison of white and non-white phenotypes collected in natural ponds, the authors demonstrated increased mortality and reduced lifetime fitness in infected Daphnia. Furthermore, white phenotypes had lower mobility, increased reflectance, larger body sizes and higher protein content than non-white phenotypes. As a consequence, total energy content was effectively doubled in white Daphnia when compared to non-white broodless Daphnia. Next the authors conducted foraging trials with Daphnia predators Notonecta (the backswimmer) and Phoxinus (the European minnow). Focusing on Notonecta, unchanged search time and increased handling time were more than compensated by the increased energy content of white Daphnia. White Daphnia were 24% more profitable and consistently preferred by Notonecta, as the optimal foraging theory would predict. The authors argue that menu decisions of optimal foragers in the field might be different, however, as the prevalence – and therefore availability - of white phenotypes in natural populations is very low. The study therefore contributes to our understanding of the trophic context of parasitism. One shortcoming of the study is that the authors rely exclusively on phenotypic signs for determining infection. On their side, DIV-1 is currently known to be highly specific to Daphnia, their study site is well within DIV-1 distributional range, and the symptoms of infection are very conspicuous. Furthermore, the infection trial – in which non-white Daphnia were exposed to white Daphnia homogenates - effectively caused several lethal and sublethal effects associated with DIV-1 infection, including iridescence. However, the infection trial also demonstrated that part of the exposed individuals developed intermediate traits while still keeping the non-white, non-iridescent phenotype. Thus, there may be more subtleties to the association of DIV-1 infection of Daphnia with ecological and evolutionary consequences, such as costs to resistance or covert infection, that the authors acknowledge, and that would be benefitted by coupling experimental and observational studies with the determination of actual infection and viral loads. References Prosnier L., N. Loeuille, F.D. Hulot, D. Renault, C. Piscart, B. Bicocchi, M, Deparis, M. Lam, & V. Médoc. (2023). Parasites make hosts more profitable but less available to predators. BioRxiv, ver. 4 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.02.08.479552 | Parasites make hosts more profitable but less available to predators | Loïc Prosnier, Nicolas Loeuille, Florence D. Hulot, David Renault, Christophe Piscart, Baptiste Bicocchi, Muriel Deparis, Matthieu Lam, Vincent Médoc | <p>Parasites are omnipresent, and their eco-evolutionary significance has aroused much interest from scientists. Parasites may affect their hosts in many ways by altering host density, vulnerability to predation, and energy content, thus modifying... | Community ecology, Eco-evolutionary dynamics, Epidemiology, Experimental ecology, Food webs, Foraging, Freshwater ecology, Host-parasite interactions, Life history, Parasitology, Statistical ecology | Luis Schiesari | 2022-05-20 10:15:41 | View | ||
16 Jun 2023
Colonisation debt: when invasion history impacts current range expansionThibaut Morel-Journel, Marjorie Haond, Lana Duan, Ludovic Mailleret, Elodie Vercken https://doi.org/10.1101/2022.11.13.516255Combining stochastic models and experiments to understand dispersal in heterogeneous environmentsRecommended by Joaquín Hortal based on reviews by 2 anonymous reviewersDispersal is a key element of the natural dynamics of meta-communities, and plays a central role in the success of populations colonizing new landscapes. Understanding how demographic processes may affect the speed at which alien species spread through environmentally-heterogeneous habitat fragments is therefore of key importance to manage biological invasions. This requires studying together the complex interplay of dispersal and population processes, two inextricably related phenomena that can produce many possible outcomes. Stochastic models offer an opportunity to describe this kind of process in a meaningful way, but to ensure that they are realistic (sensu Levins 1966) it is also necessary to combine model simulations with empirical data (Snäll et al. 2007). Morel-Journel et al. (2023) put together stochastic models and experimental data to study how population density may affect the speed at which alien species spread through a heterogeneous landscape. They do it by focusing on what they call ‘colonisation debt’, which is merely the impact that population density at the invasion front may have on the speed at which the species colonizes patches of different carrying capacities. They investigate this issue through two largely independent approaches. First, a stochastic model of dispersal throughout the patches of a linear, 1-dimensional landscape, which accounts for different degrees of density-dependent growth. And second, a microcosm experiment of a parasitoid wasp colonizing patches with different numbers of host eggs. In both cases, they compare the velocity of colonization of patches with lower or higher carrying capacity than the previous one (i.e. what they call upward or downward gradients). Their results show that density-dependent processes influence the speed at which new fragments are colonized is significantly reduced by positive density dependence. When either population growth or dispersal rate depend on density, colonisation debt limits the speed of invasion, which turns out to be dependent on the strength and direction of the gradient between the conditions of the invasion front, and the newly colonized patches. Although this result may be quite important to understand the meta-population dynamics of dispersing species, it is important to note that in their study the environmental differences between patches do not take into account eventual shifts in the scenopoetic conditions (i.e. the values of the environmental parameters to which species niches’ respond to; Hutchinson 1978, see also Soberón 2007). Rather, differences arise from variations in the carrying capacity of the patches that are consecutively invaded, both in the in silico and microcosm experiments. That is, they account for potential differences in the size or quality of the invaded fragments, but not on the costs of colonizing fragments with different environmental conditions, which may also determine invasion speed through niche-driven processes. This aspect can be of particular importance in biological invasions or under climate change-driven range shifts, when adaptation to new environments is often required (Sakai et al. 2001; Whitney & Gabler 2008; Hill et al. 2011). The expansion of geographical distribution ranges is the result of complex eco-evolutionary processes where meta-community dynamics and niche shifts interact in a novel physical space and/or environment (see, e.g., Mestre et al. 2020). Here, the invasibility of native communities is determined by niche variations and how similar are the traits of alien and native species (Hui et al. 2023). Within this context, density-dependent processes will build upon and heterogeneous matrix of native communities and environments (Tischendorf et al. 2005), to eventually determine invasion success. What the results of Morel-Journel et al. (2023) show is that, when the invader shows density dependence, the invasion process can be slowed down by variations in the carrying capacity of patches along the dispersal front. This can be particularly useful to manage biological invasions; ongoing invasions can be at least partially controlled by manipulating the size or quality of the patches that are most adequate to the invader, controlling host populations to reduce carrying capacity. But further, landscape manipulation of such kind could be used in a preventive way, to account in advance for the effects of the introduction of alien species for agricultural exploitation or biological control, thereby providing an additional safeguard to practices such as the introduction of parasitoids to control plagues. These practical aspects are certainly worth exploring further, together with a more explicit account of the influence of the abiotic conditions and the characteristics of the invaded communities on the success and speed of biological invasions. REFERENCES Hill, J.K., Griffiths, H.M. & Thomas, C.D. (2011) Climate change and evolutionary adaptations at species' range margins. Annual Review of Entomology, 56, 143-159. https://doi.org/10.1146/annurev-ento-120709-144746 Hui, C., Pyšek, P. & Richardson, D.M. (2023) Disentangling the relationships among abundance, invasiveness and invasibility in trait space. npj Biodiversity, 2, 13. https://doi.org/10.1038/s44185-023-00019-1 Hutchinson, G.E. (1978) An introduction to population biology. Yale University Press, New Haven, CT. Levins, R. (1966) The strategy of model building in population biology. American Scientist, 54, 421-431. Mestre, A., Poulin, R. & Hortal, J. (2020) A niche perspective on the range expansion of symbionts. Biological Reviews, 95, 491-516. https://doi.org/10.1111/brv.12574 Morel-Journel, T., Haond, M., Duan, L., Mailleret, L. & Vercken, E. (2023) Colonisation debt: when invasion history impacts current range expansion. bioRxiv, 2022.11.13.516255, ver. 3 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.11.13.516255 Snäll, T., B. O'Hara, R. & Arjas, E. (2007) A mathematical and statistical framework for modelling dispersal. Oikos, 116, 1037-1050. https://doi.org/10.1111/j.0030-1299.2007.15604.x Sakai, A.K., Allendorf, F.W., Holt, J.S., Lodge, D.M., Molofsky, J., With, K.A., Baughman, S., Cabin, R.J., Cohen, J.E., Ellstrand, N.C., McCauley, D.E., O'Neil, P., Parker, I.M., Thompson, J.N. & Weller, S.G. (2001) The population biology of invasive species. Annual Review of Ecology and Systematics, 32, 305-332. https://doi.org/10.1146/annurev.ecolsys.32.081501.114037 Soberón, J. (2007) Grinnellian and Eltonian niches and geographic distributions of species. Ecology Letters, 10, 1115-1123. https://doi.org/10.1111/j.1461-0248.2007.01107.x Tischendorf, L., Grez, A., Zaviezo, T. & Fahrig, L. (2005) Mechanisms affecting population density in fragmented habitat. Ecology and Society, 10, 7. https://doi.org/10.5751/ES-01265-100107 Whitney, K.D. & Gabler, C.A. (2008) Rapid evolution in introduced species, 'invasive traits' and recipient communities: challenges for predicting invasive potential. Diversity and Distributions, 14, 569-580. https://doi.org/10.1111/j.1472-4642.2008.00473.x | Colonisation debt: when invasion history impacts current range expansion | Thibaut Morel-Journel, Marjorie Haond, Lana Duan, Ludovic Mailleret, Elodie Vercken | <p>Demographic processes that occur at the local level, such as positive density dependence in growth or dispersal, are known to shape population range expansion, notably by linking carrying capacity to invasion speed. As a result of these process... | Biological invasions, Colonization, Dispersal & Migration, Experimental ecology, Landscape ecology, Population ecology, Spatial ecology, Metacommunities & Metapopulations, Theoretical ecology | Joaquín Hortal | Anonymous, Anonymous | 2022-11-16 15:52:08 | View |
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