|Id||Title||Authors||Abstract||Picture||Thematic fields||Recommender||Reviewers||Submission date|
04 Sep 2019
Gene expression plasticity and frontloading promote thermotolerance in Pocillopora coralsK. Brener-Raffalli, J. Vidal-Dupiol, M. Adjeroud, O. Rey, P. Romans, F. Bonhomme, M. Pratlong, A. Haguenauer, R. Pillot, L. Feuillassier, M. Claereboudt, H. Magalon, P. Gélin, P. Pontarotti, D. Aurelle, G. Mitta, E. Toulza https://doi.org/10.1101/398602
Transcriptomics of thermal stress response in coralsRecommended by Staffan Jacob based on reviews by Mar Sobral
Climate change presents a challenge to many life forms and the resulting loss of biodiversity will critically depend on the ability of organisms to timely respond to a changing environment. Shifts in ecological parameters have repeatedly been attributed to global warming, with the effectiveness of these responses varying among species [1, 2]. Organisms do not only have to face a global increase in mean temperatures, but a complex interplay with another crucial but largely understudied aspect of climate change: thermal fluctuations. Understanding the mechanisms underlying adaptation to thermal fluctuations is thus a timely and critical challenge.
 Parmesan, C., & Yohe, G. (2003). A globally coherent fingerprint of climate change impacts across natural systems. Nature, 421(6918), 37–42. doi: 10.1038/nature01286
|Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals||K. Brener-Raffalli, J. Vidal-Dupiol, M. Adjeroud, O. Rey, P. Romans, F. Bonhomme, M. Pratlong, A. Haguenauer, R. Pillot, L. Feuillassier, M. Claereboudt, H. Magalon, P. Gélin, P. Pontarotti, D. Aurelle, G. Mitta, E. Toulza||<p>Ecosystems worldwide are suffering from climate change. Coral reef ecosystems are globally threatened by increasing sea surface temperatures. However, gene expression plasticity provides the potential for organisms to respond rapidly and effect...||Climate change, Evolutionary ecology, Marine ecology, Molecular ecology, Phenotypic plasticity, Symbiosis||Staffan Jacob||2018-08-29 10:46:55||View|
07 Aug 2019
Is behavioral flexibility related to foraging and social behavior in a rapidly expanding species?Corina Logan, Luisa Bergeron, Carolyn Rowney, Kelsey McCune, Dieter Lukas http://corinalogan.com/Preregistrations/g_flexforaging.html
Understanding geographic range expansions in human-dominated landscapes: does behavioral flexibility modulate flexibility in foraging and social behavior?Recommended by Julia Astegiano and Esther Sebastián González based on reviews by Pizza Ka Yee Chow and Esther Sebastián González
Which biological traits modulate species distribution has historically been and still is one of the core questions of the macroecology and biogeography agenda [1, 2]. As most of the Earth surface has been modified by human activities  understanding the strategies that allow species to inhabit human-dominated landscapes will be key to explain species geographic distribution in the Anthropocene. In this vein, Logan et al.  are working on a long-term and integrative project aimed to investigate how great-tailed grackles rapidly expanded their geographic range into North America . Particularly, they want to determine which is the role of behavioral flexibility, i.e. an individual’s ability to modify its behavior when circumstances change based on learning from previous experience , in rapid geographic range expansions. The authors are already working in a set of complementary questions described in pre-registrations that have already been recommended at PCI Ecology: (1) Do individuals with greater behavioral flexibility rely more on causal cognition ? (2) Which are the mechanisms that lead to behavioral flexibility ? (3) Does the manipulation of behavioral flexibility affect exploration, but not boldness, persistence, or motor diversity ? (4) Can context changes improve behavioral flexibility ?
 Gaston K. J. (2003) The structure and dynamics of geographic ranges. Oxford series in Ecology and Evolution. Oxford University Press, New York.
|Is behavioral flexibility related to foraging and social behavior in a rapidly expanding species?||Corina Logan, Luisa Bergeron, Carolyn Rowney, Kelsey McCune, Dieter Lukas||This is one of the first studies planned for our long-term research on the role of behavioral flexibility in rapid geographic range expansions. Project background: Behavioral flexibility, the ability to change behavior when circumstances change ba...||Behaviour & Ethology, Preregistrations, Zoology||Julia Astegiano||2018-10-23 00:47:03||View|
20 Jun 2019
Sexual segregation in a highly pagophilic and sexually dimorphic marine predatorChristophe Barbraud, Karine Delord, Akiko Kato, Paco Bustamante, Yves Cherel https://doi.org/10.1101/472431
Sexual segregation in a sexually dimorphic seabird: a matter of spatial scaleRecommended by Denis Réale based on reviews by Dries Bonte and 1 anonymous reviewer
Sexual segregation appears in many taxa and can have important ecological, evolutionary and conservation implications. Sexual segregation can take two forms: either the two sexes specialise in different habitats but share the same area (habitat segregation), or they occupy the same habitat but form separate, unisex groups (social segregation) [1,2]. Segregation would have evolved as a way to avoid, or at least, reduce intersexual competition.
 Conradt, L. (2005). Definitions, hypotheses, models and measures in the study of animal segregation. In Sexual segregation in vertebrates: ecology of the two sexes (Ruckstuhl K.E. and Neuhaus, P. eds). Cambridge University Press, Cambridge, United Kingdom. Pp:11–34.
|Sexual segregation in a highly pagophilic and sexually dimorphic marine predator||Christophe Barbraud, Karine Delord, Akiko Kato, Paco Bustamante, Yves Cherel||<p>Sexual segregation is common in many species and has been attributed to intra-specific competition, sex-specific differences in foraging efficiency or in activity budgets and habitat choice. However, very few studies have simultaneously quantif...||Foraging, Marine ecology||Denis Réale||Dries Bonte, Anonymous||2018-11-19 13:40:59||View|
12 Jun 2019
Environmental heterogeneity drives tsetse fly population dynamics and controlCecilia H, Arnoux S, Picault S, Dicko A, Seck MT, Sall B, Bassene M, Vreysen M, Pagabeleguem S, Bance A, Bouyer J, Ezanno P https://doi.org/10.1101/493650
Modeling jointly landscape complexity and environmental heterogeneity to envision new strategies for tsetse flies controlRecommended by Benjamin Roche based on reviews by Timothée Vergne and 1 anonymous reviewer
Today, understanding spatio-temporal dynamics of pathogens is pivotal to understand their transmission and controlling them. First, understanding this dynamics can reveal the ecology of their transmission . Indeed, such knowledge, based on data that are quite easy to access, can shed light on transmission modes, which could rely on different animal species that can be spatially distributed in a non-uniform way . This is especially true for pathogens with complex life-cycles, despite that investigating such dynamics is very challenging and rely mostly on mathematical models.
 Grenfell, B. T., Bjørnstad, O. N., & Kappey, J. (2001). Travelling waves and spatial hierarchies in measles epidemics. Nature, 414(6865), 716-723. doi: 10.1038/414716a
|Environmental heterogeneity drives tsetse fly population dynamics and control||Cecilia H, Arnoux S, Picault S, Dicko A, Seck MT, Sall B, Bassene M, Vreysen M, Pagabeleguem S, Bance A, Bouyer J, Ezanno P||<p>A spatially and temporally heterogeneous environment may lead to unexpected population dynamics. Knowledge still is needed on which of the local environment properties favour population maintenance at larger scale. For pathogen vectors, such as...||Biological control, Population ecology, Spatial ecology, Metacommunities & Metapopulations||Benjamin Roche||2018-12-14 12:13:39||View|
27 May 2019
Community size affects the signals of ecological drift and selection on biodiversityTadeu Siqueira, Victor S. Saito, Luis M. Bini, Adriano S. Melo, Danielle K. Petsch, Victor L. Landeiro, Kimmo T. Tolonen, Jenny Jyrkänkallio-Mikkola, Janne Soininen, Jani Heino https://doi.org/10.1101/515098
Toward an empirical synthesis on the niche versus stochastic debateRecommended by Eric Harvey based on reviews by Kevin Cazelles and Romain Bertrand
As far back as Clements  and Gleason , the historical schism between deterministic and stochastic perspectives has divided ecologists. Deterministic theories tend to emphasize niche-based processes such as environmental filtering and species interactions as the main drivers of species distribution in nature, while stochastic theories mainly focus on chance colonization, random extinctions and ecological drift . Although the old days when ecologists were fighting fiercely over null models and their adequacy to capture niche-based processes is over , the ghost of that debate between deterministic and stochastic perspectives came back to haunt ecologists in the form of the ‘environment versus space’ debate with the development of metacommunity theory . While interest in that question led to meaningful syntheses of metacommunity dynamics in natural systems , it also illustrated how context-dependant the answer was . One of the next frontiers in metacommunity ecology is to identify the underlying drivers of this observed context-dependency in the relative importance of ecological processus [7, 8].
 Clements, F. E. (1936). Nature and structure of the climax. Journal of ecology, 24(1), 252-284. doi: 10.2307/2256278
|Community size affects the signals of ecological drift and selection on biodiversity||Tadeu Siqueira, Victor S. Saito, Luis M. Bini, Adriano S. Melo, Danielle K. Petsch, Victor L. Landeiro, Kimmo T. Tolonen, Jenny Jyrkänkallio-Mikkola, Janne Soininen, Jani Heino||<p>Ecological drift can override the effects of deterministic niche selection on small populations and drive the assembly of small communities. We tested the hypothesis that smaller local communities are more dissimilar among each other because of...||Biodiversity, Coexistence, Community ecology, Competition, Conservation biology, Dispersal & Migration, Freshwater ecology, Spatial ecology, Metacommunities & Metapopulations||Eric Harvey||2019-01-09 19:06:21||View|
22 May 2019
Sex makes them sleepy: host reproductive status induces diapause in a parasitoid population experiencing harsh wintersTougeron K., Brodeur J., van Baaren J., Renault D. and Le Lann C. https://doi.org/10.1101/371385
The response of interacting species to biotic seasonal cuesRecommended by Adele Mennerat and Enric Frago based on reviews by Anne Duplouy and 1 anonymous reviewer
In temperate regions, food abundance and quality vary greatly throughout the year, and the ability of organisms to synchronise their phenology to these changes is a key determinant of their reproductive success. Successful synchronisation requires that cues are perceived prior to change, leaving time for physiological adjustments.
 Tauber, M. J., Tauber, C. A., and Masaki, S. (1986). Seasonal Adaptations of Insects. Oxford, New York: Oxford University Press.
|Sex makes them sleepy: host reproductive status induces diapause in a parasitoid population experiencing harsh winters||Tougeron K., Brodeur J., van Baaren J., Renault D. and Le Lann C.||<p>When organisms coevolve, any change in one species can induce phenotypic changes in traits and ecology of the other species. The role such interactions play in ecosystems is central, but their mechanistic bases remain underexplored. Upper troph...||Coexistence, Evolutionary ecology, Experimental ecology, Host-parasite interactions, Physiology||Adele Mennerat||2018-07-18 18:51:03||View|
14 May 2019
Field assessment of precocious maturation in salmon parr using ultrasound imagingMarie Nevoux, Frédéric Marchand, Guillaume Forget, Dominique Huteau, Julien Tremblay, Jean-Pierre Destouches https://doi.org/10.1101/425561
OB-GYN for salmon parrsRecommended by Jean-Olivier Irisson based on reviews by Hervé CAPRA and 1 anonymous reviewer
Population dynamics and stock assessment models are only as good as the data used to parameterise them. For Atlantic salmon (Salmo salar) populations, a critical parameter may be frequency of precocious maturation. Indeed, the young males (parrs) that mature early, before leaving the river to reach the ocean, can contribute to reproduction but have much lower survival rates afterwards. The authors cite evidence of the potentially major consequences of this alternate reproductive strategy. So, to be parameterised correctly, it needs to be assessed correctly. Cue the ultrasound machine.
Through a thorough analysis of data collected on 850 individuals , over three years, the authors clearly show that the non-invasive examination of the internal cavity of young fishes to look for gonads, using a portable ultrasound machine, provides reliable and replicable evidence of precocious maturation. They turned into OB-GYN for salmons (albeit for male salmons!) and it worked. While using ultrasounds to detect fish gonads is not a new idea (early attempts for salmonids date back to the 80s ), the value here is in the comparison with the classic visual inspection technique (which turns out to be less reliable) and the fact that ultrasounds can now easily be carried out in the field.
Beyond the potentially important consequences of this new technique for the correct assessment of salmon population dynamics, the authors also make the case for the acquisition of more reliable individual-level data in ecological studies, which I applaud.
 Nevoux M, Marchand F, Forget G, Huteau D, Tremblay J, and Destouches J-P. (2019). Field assessment of precocious maturation in salmon parr using ultrasound imaging. bioRxiv 425561, ver. 3 peer-reviewed and recommended by PCI Ecology. doi: 10.1101/425561
|Field assessment of precocious maturation in salmon parr using ultrasound imaging||Marie Nevoux, Frédéric Marchand, Guillaume Forget, Dominique Huteau, Julien Tremblay, Jean-Pierre Destouches||<p>Salmonids are characterized by a large diversity of life histories, but their study is often limited by the imperfect observation of the true state of an individual in the wild. Challenged by the need to reduce uncertainty of empirical data, re...||Conservation biology, Demography, Experimental ecology, Freshwater ecology, Life history, Phenotypic plasticity, Population ecology||Jean-Olivier Irisson||2018-09-25 17:24:59||View|
05 Apr 2019
Using a large-scale biodiversity monitoring dataset to test the effectiveness of protected areas at conserving North-American breeding birdsVictor Cazalis, Soumaya Belghali, Ana S.L. Rodrigues https://doi.org/10.1101/433037
Protected Areas effects on biodiversity: a test using bird data that hopefully will give ideas for much more studies to comeRecommended by Paul Caplat based on reviews by Willson Gaul and 1 anonymous reviewer
In the face of worldwide declines in biodiversity, evaluating the effectiveness of conservation practices is an absolute necessity. Protected Areas (PA) are a key tool for conservation, and the question “Are PA effective” has been on many a research agenda, as the introduction to this preprint will no doubt convince you. A challenge we face is that, until now, few studies have been explicitly designed to evaluate PA, and despite the rise of meta-analyses on the topic, our capacity to quantify their effect on biodiversity remains limited.
 Cazalis, V., Belghali, S., & Rodrigues, A. S. (2019). Using a large-scale biodiversity monitoring dataset to test the effectiveness of protected areas at conserving North-American breeding birds. bioRxiv, 433037, ver. 4 peer-reviewed and recommended by PCI Ecology. doi: 10.1101/433037
|Using a large-scale biodiversity monitoring dataset to test the effectiveness of protected areas at conserving North-American breeding birds||Victor Cazalis, Soumaya Belghali, Ana S.L. Rodrigues||<p>Protected areas currently cover about 15% of the global land area, and constitute one of the main tools in biodiversity conservation. Quantifying their effectiveness at protecting species from local decline or extinction involves comparing prot...||Biodiversity, Conservation biology, Human impact, Landscape ecology, Macroecology||Paul Caplat||2018-10-04 08:43:34||View|
01 Apr 2019
The inherent multidimensionality of temporal variability: How common and rare species shape stability patternsJean-François Arnoldi, Michel Loreau, Bart Haegeman https://doi.org/10.1101/431296
Diversity-Stability and the Structure of PerturbationsRecommended by Kevin Cazelles and Kevin Shear McCann based on reviews by Frederic Barraquand and 1 anonymous reviewer
In his 1972 paper “Will a Large Complex System Be Stable?” , May challenges the idea that large communities are more stable than small ones. This was the beginning of a fundamental debate that still structures an entire research area in ecology: the diversity-stability debate . The most salient strength of May’s work was to use a mathematical argument to refute an idea based on the observations that simple communities are less stable than large ones. Using the formalism of dynamical systems and a major results on the distribution of the eigen values for random matrices, May demonstrated that the addition of random interactions destabilizes ecological communities and thus, rich communities with a higher number of interactions should be less stable. But May also noted that his mathematical argument holds true only if ecological interactions are randomly distributed and thus concluded that this must not be true! This is how the contradiction between mathematics and empirical observations led to new developments in the study of ecological networks.
 May, Robert M (1972). Will a Large Complex System Be Stable? Nature 238, 413–414. doi: 10.1038/238413a0
|The inherent multidimensionality of temporal variability: How common and rare species shape stability patterns||Jean-François Arnoldi, Michel Loreau, Bart Haegeman||<p>Empirical knowledge of ecosystem stability and diversity-stability relationships is mostly based on the analysis of temporal variability of population and ecosystem properties. Variability, however, often depends on external factors that act as...||Biodiversity, Coexistence, Community ecology, Competition, Interaction networks, Theoretical ecology||Kevin Cazelles||2018-10-02 14:01:03||View|
28 Mar 2019
Direct and transgenerational effects of an experimental heat wave on early life stages in a freshwater snailKatja Leicht, Otto Seppälä https://doi.org/10.1101/449777
Escargots cooked just right: telling apart the direct and indirect effects of heat waves in freashwater snailsRecommended by vincent calcagno based on reviews by Amanda Lynn Caskenette, Kévin Tougeron and arnaud sentis
Amongst the many challenges and forms of environmental change that organisms face in our era of global change, climate change is perhaps one of the most straightforward and amenable to investigation. First, measurements of day-to-day temperatures are relatively feasible and accessible, and predictions regarding the expected trends in Earth surface temperature are probably some of the most reliable we have. It appears quite clear, in particular, that beyond the overall increase in average temperature, the heat waves locally experienced by organisms in their natural habitats are bound to become more frequent, more intense, and more long-lasting . Second, it is well appreciated that temperature is a major environmental factor with strong impacts on different facets of organismal development and life-history [2-4]. These impacts have reasonably clear mechanistic underpinnings, with definite connections to biochemistry, physiology, and considerations on energetics. Third, since variation in temperature is a challenge already experienced by natural populations across their current and historical ranges, it is not a completely alien form of environmental change. Therefore, we already learnt quite a lot about it in several species, and so did the species, as they may be expected to have evolved dedicated adaptive mechanisms to respond to elevated temperatures. Last, but not least, temperature is quite amenable to being manipulated as an experimental factor.
 Meehl, G. A., & Tebaldi, C. (2004). More intense, more frequent, and longer lasting heat waves in the 21st century. Science (New York, N.Y.), 305(5686), 994–997. doi: 10.1126/science.1098704
|Direct and transgenerational effects of an experimental heat wave on early life stages in a freshwater snail||Katja Leicht, Otto Seppälä||<p>Global climate change imposes a serious threat to natural populations of many species. Estimates of the effects of climate change‐mediated environmental stresses are, however, often based only on their direct effects on organisms, and neglect t...||Climate change||vincent calcagno||2018-10-22 22:19:22||View|