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20 Mar 2025
![]() Modelling Eurasian lynx populations in Western Europe: What prospects for the next 50 years?Sarah Bauduin, Estelle Germain, Fridolin Zimmermann, Sylvia Idelberger, Micha Herdtfelder, Marco Heurich, Stephanie Kramer-Schadt, Christophe Duchamp, Nolwenn Drouet-Hoguet, Alain Morand, Laetitia Blanc, Anaïs Charbonnel, Olivier Gimenez https://doi.org/10.1101/2021.10.22.465393Glimmers of hope for the Eurasian lynx in Western EuropeRecommended by Elodie Vercken based on reviews by Hector Ruiz and Henrik AndrenThe conservation of large carnivores remains a challenge for biodiversity conservation (Ingeman et al. 2022), as they combine strict ecological requirements (large territories, sensitivity to human disturbance) with coexistence conflicts with human activities (livestock farming, hunting, risk perception). Although the Eurasian lynx is currently considered as “least concerned” by the IUCN Red List, this favorable status conceals major disparities between the remaining historical population nuclei in Northern and Eastern Europe and small, isolated populations in Western Europe resulting from reintroduction programs for which long-term persistence remains in jeopardy (Chapron et al. 2014). References Bauduin S, Germain E, Zimmermann F, Idelberger S, Herdtfelder M, Heurich M, Kramer-Schadt S, Duchamp C, Drouet-Hoguet N, Morand A, Blanc L, Charbonnel A, Gimenez O. 2025. Modelling Eurasian lynx populations in Western Europe: What prospects for the next 50 years?https://doi.org/10.1101/2021.10.22.465393 Chapron G, et al. 2014. Recovery of large carnivore in Europe’s modern human-dominated landscapes. Science 345: 1517-1519 https://doi.org/10.1126/science.1257553 Gatti S. 2022. National Action Plan for the Eurasian Lynx: restoring the Lynx to a favorable conservation status un France (2022-2026), 176 p. Ingeman, K.E., Zhao, L.Z., Wolf, C. et al. 2022. Glimmers of hope in large carnivore recoveries.Sci Rep 12, 10005 https://doi.org/10.1038/s41598-022-13671-7 | Modelling Eurasian lynx populations in Western Europe: What prospects for the next 50 years? | Sarah Bauduin, Estelle Germain, Fridolin Zimmermann, Sylvia Idelberger, Micha Herdtfelder, Marco Heurich, Stephanie Kramer-Schadt, Christophe Duchamp, Nolwenn Drouet-Hoguet, Alain Morand, Laetitia Blanc, Anaïs Charbonnel, Olivier Gimenez | <p>Persistence of populations may be uncertain for large carnivore species, especially for those established in human-dominated landscapes. Here, we studied the Eurasian lynx in Western Europe established in the Upper Rhine meta-population (i.e., ... | ![]() | Conservation biology, Demography, Dispersal & Migration, Habitat selection, Population ecology, Spatial ecology, Metacommunities & Metapopulations | Elodie Vercken | 2022-01-19 10:17:56 | View | |
16 Oct 2018
Impact of group management and transfer on individual sociality in Highland cattle (Bos Taurus)Sebastian Sosa, Marie Pelé, Elise Debergue, Cedric Kuntz, Blandine Keller, Florian Robic, Flora Siegwalt-Baudin, Camille Richer, Amandine Ramos, Cédric Sueur https://doi.org/10.48550/arXiv.1805.11553How empirical sciences may improve livestock welfare and help their managementRecommended by Marie Charpentier based on reviews by Alecia CARTER and 1 anonymous reviewerUnderstanding how livestock management is a source of social stress and disturbances for cattle is an important question with potential applications for animal welfare programs and sustainable development. In their article, Sosa and colleagues [1] first propose to evaluate the effects of individual characteristics on dyadic social relationships and on the social dynamics of four groups of cattle. Using network analyses, the authors provide an interesting and complete picture of dyadic interactions among groupmates. Although shown elsewhere, the authors demonstrate that individuals that are close in age and close in rank form stronger dyadic associations than other pairs. Second, the authors take advantage of some transfers of animals between groups -for management purposes- to assess how these transfers affect the social dynamics of groupmates. Their central finding is that the identity of transferred animals is a key-point. In particular, removing offspring strongly destabilizes the social relationships of mothers while adding a bull into a group also profoundly impacts female-female social relationships, as social networks before and after transfer of these key-animals are completely different. In addition, individuals, especially the young ones, that are transferred without familiar conspecifics take more time to socialize with their new group members than individuals transferred with familiar groupmates, generating a potential source of stress. Interestingly, the authors end up their article with some thoughts on the implications of their findings for animal welfare and ethics. This study provides additional evidence that empirical science has a major role to play in providing recommendations regarding societal questions such as livestock management and animal wellbeing. References [1] Sosa, S., Pelé, M., Debergue, E., Kuntz, C., Keller, B., Robic, F., Siegwalt-Baudin, F., Richer, C., Ramos, A., & Sueur C. (2018). Impact of group management and transfer on individual sociality in Highland cattle (Bos Taurus). arXiv:1805.11553v4 [q-bio.PE] peer-reviewed and recommended by PCI Ecol. https://arxiv.org/abs/1805.11553v4 | Impact of group management and transfer on individual sociality in Highland cattle (Bos Taurus) | Sebastian Sosa, Marie Pelé, Elise Debergue, Cedric Kuntz, Blandine Keller, Florian Robic, Flora Siegwalt-Baudin, Camille Richer, Amandine Ramos, Cédric Sueur | <p>The sociality of cattle facilitates the maintenance of herd cohesion and synchronisation, making these species the ideal choice for domestication as livestock for humans. However, livestock populations are not self-regulated, and farmers transf... | Behaviour & Ethology, Social structure | Marie Charpentier | 2018-05-30 14:05:39 | View | ||
14 Dec 2022
The contrasted impacts of grasshoppers on soil microbial activities in function of primary production and herbivore dietSébastien Ibanez, Arnaud Foulquier, Charles Brun, Marie-Pascale Colace, Gabin Piton, Lionel Bernard, Christiane Gallet, Jean-Christophe Clément https://doi.org/10.1101/2022.07.04.497718Complex interactions between ecosystem productivity and herbivore diets lead to non-predicted effects on nutrient cyclingRecommended by Sébastien BarotThe authors present a study typical of the field of belowground-aboveground interactions [1]. This framework has been extremely fruitful since the beginning of 2000s [2]. It has also contributed to bridge the gap between soil ecology and the rest of ecology [3]. The study also pertains to the rich field on the impacts of herbivores on soil functioning [4]. The study more precisely tested during two years the effect on nutrient cycling of the interaction between the type of grassland (along a gradient of biomass productivity) and the diet of the community of insect herbivores (5 treatments manipulating the grasshopper community on 1 m2 plots, with a gradient from no grasshopper to grasshoppers either specialized on forbs or grasses). What seems extremely interesting is that the study is based on a rigorous hypothesis-testing approach. They compare the predictions of two frameworks: (1) The “productivity model” predicts that in productive ecosystems herbivores consume a high percentage of the net primary production thus accelerating nutrient cycling. (2) The “diet model” distinguishes herbivores consuming exploitative plants from those eating conservative plants. The former (later) type of herbivores favours conservative (exploitative) plants therefore decelerating (accelerating) nutrient cycling. Interestingly, the two frameworks have similar predictions (and symmetrically opposite predictions) in two cases out of four combinations between ecosystem productivities and types of diet (see Table 1). An other merit of the study is to combine in a rather comprehensive way all the necessary measurements to test these frameworks in combination: grasshopper diet, soil properties, characteristics of the soil microbial community, plant traits, vegetation survey and plant biomass. The results were in contradiction with the ‘‘diet model’’: microbial properties and nitrogen cycling did not depend on grasshopper diet. The productivity of the grasslands did impact nutrient cycling but not in the direction predicted by the “productivity model”: productive grasslands hosted exploitative plants that depleted N resources in the soil and microbes producing few extracellular enzymes, which led to a lower potential N mineralization and a deceleration of nutrient cycling. Because, the authors stuck to their original hypotheses (that were not confirmed), they were able to discuss in a very relevant way their results and to propose some interpretations, at least partially based on the time scales involved by the productivity and diet models. Beyond all the merits of this article, I think that two issues remain largely open in relation with the dynamics of the studied systems, and would deserve future research efforts. First, on the ‘‘short’’ term (up to several decades), can we predict how the communities of plants, soil microbes, and herbivores interact to drive the dynamics of the ecosystems? Second, at the evolutionary time scale, can we understand and predict the interactions between the evolution of plant, microbe and herbivore strategies and the consequences for the functioning of the grasslands? The two issues are difficult because of the multiple feedbacks involved. One way to go further would be to complement the empirical approach with models along existing research avenues [5, 6]. References [1] Ibanez S, Foulquier A, Brun C, Colace M-P, Piton G, Bernard L, Gallet C, Clément J-C (2022) The contrasted impacts of grasshoppers on soil microbial activities in function of primary production and herbivore diet. bioRxiv, 2022.07.04.497718, ver. 2 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.07.04.497718 [2] Hooper, D. U., Bignell, D. E., Brown, V. K., Brussaard, L., Dangerfield, J. M., Wall, D. H., Wardle, D. A., Coleman, D. C., Giller, K. E., Lavelle, P., Van der Putten, W. H., De Ruiter, P. C., et al. 2000. Interactions between aboveground and belowground biodiversity in terretrial ecosystems: patterns, mechanisms, and feedbacks. BioScience, 50, 1049-1061. https://doi.org/10.1641/0006-3568(2000)050[1049:IBAABB]2.0.CO;2 [3] Barot, S., Blouin, M., Fontaine, S., Jouquet, P., Lata, J.-C., and Mathieu, J. 2007. A tale of four stories: soil ecology, theory, evolution and the publication system. PLoS ONE, 2, e1248. https://doi.org/10.1371/journal.pone.0001248 [4] Bardgett, R. D., and Wardle, D. A. 2003. Herbivore-mediated linkages between aboveground and belowground communities. Ecology, 84, 2258-2268. https://doi.org/10.1890/02-0274 [5] Barot, S., Bornhofen, S., Loeuille, N., Perveen, N., Shahzad, T., and Fontaine, S. 2014. Nutrient enrichment and local competition influence the evolution of plant mineralization strategy, a modelling approach. J. Ecol., 102, 357-366. https://doi.org/10.1111/1365-2745.12200 [6] Schweitzer, J. A., Juric, I., van de Voorde, T. F. J., Clay, K., van der Putten, W. H., Bailey, J. K., and Fox, C. 2014. Are there evolutionary consequences of plant-soil feedbacks along soil gradients? Func. Ecol., 28, 55-64. https://doi.org/10.1111/1365-2435.12201
| The contrasted impacts of grasshoppers on soil microbial activities in function of primary production and herbivore diet | Sébastien Ibanez, Arnaud Foulquier, Charles Brun, Marie-Pascale Colace, Gabin Piton, Lionel Bernard, Christiane Gallet, Jean-Christophe Clément | <p style="text-align: justify;">Herbivory can have contrasted impacts on soil microbes and nutrient cycling, which has stimulated the development of conceptual frameworks exploring the links between below- and aboveground processes. The "productiv... | Ecosystem functioning, Herbivory, Soil ecology, Terrestrial ecology | Sébastien Barot | 2022-07-14 09:06:13 | View | ||
19 Feb 2020
![]() Soil variation response is mediated by growth trajectories rather than functional traits in a widespread pioneer Neotropical treeSébastien Levionnois, Niklas Tysklind, Eric Nicolini, Bruno Ferry, Valérie Troispoux, Gilles Le Moguedec, Hélène Morel, Clément Stahl, Sabrina Coste, Henri Caron, Patrick Heuret https://doi.org/10.1101/351197Growth trajectories, better than organ-level functional traits, reveal intraspecific response to environmental variationRecommended by François MunozFunctional traits are “morpho-physio-phenological traits which impact fitness indirectly via their effects on growth, reproduction and survival” [1]. Most functional traits are defined at organ level, e.g. for leaves, roots and stems, and reflect key aspects of resource acquisition and resource use by organisms for their development and reproduction [2]. More rarely, some functional traits can be related to spatial development, such as vegetative height and lateral spread in plants. References [1] Violle, C., Navas, M. L., Vile, D., Kazakou, E., Fortunel, C., Hummel, I., & Garnier, E. (2007). Let the concept of trait be functional!. Oikos, 116(5), 882-892. doi: 10.1111/j.0030-1299.2007.15559.x | Soil variation response is mediated by growth trajectories rather than functional traits in a widespread pioneer Neotropical tree | Sébastien Levionnois, Niklas Tysklind, Eric Nicolini, Bruno Ferry, Valérie Troispoux, Gilles Le Moguedec, Hélène Morel, Clément Stahl, Sabrina Coste, Henri Caron, Patrick Heuret | <p style="text-align: justify;">1- Trait-environment relationships have been described at the community level across tree species. However, whether interspecific trait-environment relationships are consistent at the intraspecific level is yet unkn... | ![]() | Botany, Eco-evolutionary dynamics, Habitat selection, Ontogeny, Tropical ecology | François Munoz | 2018-06-21 17:13:17 | View | |
12 Jan 2022
![]() No Evidence for Long-range Male Sex Pheromones in Two Malaria MosquitoesSerge Bèwadéyir Poda, Bruno Buatois, Benoit Lapeyre, Laurent Dormont, Abdoulaye Diabaté, Olivier Gnankiné, Roch K. Dabiré, Olivier Roux https://doi.org/10.1101/2020.07.05.187542The search for sex pheromones in malaria mosquitoesRecommended by Niels Verhulst based on reviews by Marcelo Lorenzo and 1 anonymous reviewerPheromones are used by many insects to find the opposite sex for mating. Especially for nocturnal mosquitoes it seems logical that such pheromones exist as they can only partly rely on visual cues when flying at night. The males of many mosquito species form swarms and conspecific females fly into these swarms to mate. The two sibling species of malaria mosquitoes Anopheles gambiae s.s. and An. coluzzii coexist and both form swarms consisting of only one species. Although hybrids can be produced, these hybrids are rarely found in nature. In the study presented by Poda and colleagues (2022) it was tested if long-range sex pheromones exist in these two mosquito sibling species. In a previous study by Mozūraites et al. (2020), five compounds (acetoin, sulcatone, octanal, nonanal and decanal) were identified that induced male swarming and increase mating success. Interestingly these compounds are frequently found in nature and have been shown to play a role in sugar feeding or host finding of An. gambiae. In the recommended study performed by Poda et al. (2022) no evidence of long-range sex pheromones in A. gambiae s.s. and An. coluzzii was found. The discrepancy between the two studies is difficult to explain but some of the methods varied between studies. Mozūraites et al. (2020) for example, collected odours from mosquitoes in small 1l glass bottles, where swarming is questionable, while in the study of Poda et al. (2022) 50 x 40 x 40 cm cages were used and swarming observed, although most swarms are normally larger. On the other hand, some of the analytical techniques used in the Mozūraites et al. (2020) study were more sensitive while others were more sensitive in the Poda et al. (2022) study. Because it is difficult to prove that something does not exist, the authors nicely indicate that “an absence of evidence is not an evidence of absence” (Poda et al., 2022). Nevertheless, recently colonized species were tested in large cage setups where swarming was observed and various methods were used to try to detect sex pheromones. No attraction to the volatile blend from male swarms was detected in an olfactometer, no antenna-electrophysiological response of females to male swarm volatile compounds was detected and no specific male swarm volatile was identified. This study will open the discussion again if (sex) pheromones play a role in swarming and mating of malaria mosquitoes. Future studies should focus on sensitive real-time volatile analysis in mating swarms in large cages or field settings. In comparison to moths for example that are very sensitive to very specific pheromones and attract from a large distance, such a long-range specific pheromone does not seem to exist in these mosquito species. Acoustic and visual cues have been shown to be involved in mating (Diabate et al., 2003; Gibson and Russell, 2006) and especially at long distances, visual cues are probably important for the detection of these swarms. References Diabate A, Baldet T, Brengues C, Kengne P, Dabire KR, Simard F, Chandre F, Hougard JM, Hemingway J, Ouedraogo JB, Fontenille D (2003) Natural swarming behaviour of the molecular M form of Anopheles gambiae. Transactions of The Royal Society of Tropical Medicine and Hygiene, 97, 713–716. https://doi.org/10.1016/S0035-9203(03)80110-4 Gibson G, Russell I (2006) Flying in Tune: Sexual Recognition in Mosquitoes. Current Biology, 16, 1311–1316. https://doi.org/10.1016/j.cub.2006.05.053 Mozūraitis, R., Hajkazemian, M., Zawada, J.W., Szymczak, J., Pålsson, K., Sekar, V., Biryukova, I., Friedländer, M.R., Koekemoer, L.L., Baird, J.K., Borg-Karlson, A.-K., Emami, S.N. (2020) Male swarming aggregation pheromones increase female attraction and mating success among multiple African malaria vector mosquito species. Nature Ecology & Evolution, 4, 1395–1401. https://doi.org/10.1038/s41559-020-1264-9 Poda, S.B., Buatois, B., Lapeyre, B., Dormont, L., Diabate, A., Gnankine, O., Dabire, R.K., Roux, O. (2022) No evidence for long-range male sex pheromones in two malaria mosquitoes. bioRxiv, 2020.07.05.187542, ver. 6 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2020.07.05.187542 | No Evidence for Long-range Male Sex Pheromones in Two Malaria Mosquitoes | Serge Bèwadéyir Poda, Bruno Buatois, Benoit Lapeyre, Laurent Dormont, Abdoulaye Diabaté, Olivier Gnankiné, Roch K. Dabiré, Olivier Roux | <p style="text-align: justify;">Cues involved in mate seeking and recognition prevent hybridization and can be involved in speciation processes. In malaria mosquitoes, females of the two sibling species <em>Anopheles gambiae</em> s.s. and <em>An. ... | ![]() | Behaviour & Ethology, Chemical ecology | Niels Verhulst | 2021-04-26 12:28:36 | View | |
13 Mar 2021
![]() Investigating sex differences in genetic relatedness in great-tailed grackles in Tempe, Arizona to infer potential sex biases in dispersalSevchik, A., Logan, C. J., McCune, K. B., Blackwell, A., Rowney, C. and Lukas, D https://doi.org/10.32942/osf.io/t6behDispersal: from “neutral” to a state- and context-dependent viewRecommended by Emanuel A. Fronhofer based on reviews by 2 anonymous reviewersTraditionally, dispersal has often been seen as “random” or “neutral” as Lowe & McPeek (2014) have put it. This simplistic view is likely due to dispersal being intrinsically difficult to measure empirically as well as “random” dispersal being a convenient simplifying assumption in theoretical work. Clobert et al. (2009), and many others, have highlighted how misleading this assumption is. Rather, dispersal seems to be usually a complex reaction norm, depending both on internal as well as external factors. One such internal factor is the sex of the dispersing individual. A recent review of the theoretical literature (Li & Kokko 2019) shows that while ideas explaining sex-biased dispersal go back over 40 years this state-dependency of dispersal is far from comprehensively understood. Sevchik et al. (2021) tackle this challenge empirically in a bird species, the great-tailed grackle. In contrast to most bird species, where females disperse more than males, the authors report genetic evidence indicating male-biased dispersal. The authors argue that this difference can be explained by the great-tailed grackle’s social and mating-system. Dispersal is a central life-history trait (Bonte & Dahirel 2017) with major consequences for ecological and evolutionary processes and patterns. Therefore, studies like Sevchik et al. (2021) are valuable contributions for advancing our understanding of spatial ecology and evolution. Importantly, Sevchik et al. also lead to way to a more open and reproducible science of ecology and evolution. The authors are among the pioneers of preregistering research in their field and their way of doing research should serve as a model for others. References Bonte, D. & Dahirel, M. (2017) Dispersal: a central and independent trait in life history. Oikos 126: 472-479. doi: https://doi.org/10.1111/oik.03801 Clobert, J., Le Galliard, J. F., Cote, J., Meylan, S. & Massot, M. (2009) Informed dispersal, heterogeneity in animal dispersal syndromes and the dynamics of spatially structured populations. Ecol. Lett.: 12, 197-209. doi: https://doi.org/10.1111/j.1461-0248.2008.01267.x Li, X.-Y. & Kokko, H. (2019) Sex-biased dispersal: a review of the theory. Biol. Rev. 94: 721-736. doi: https://doi.org/10.1111/brv.12475 Lowe, W. H. & McPeek, M. A. (2014) Is dispersal neutral? Trends Ecol. Evol. 29: 444-450. doi: https://doi.org/10.1016/j.tree.2014.05.009 Sevchik, A., Logan, C. J., McCune, K. B., Blackwell, A., Rowney, C. & Lukas, D. (2021) Investigating sex differences in genetic relatedness in great-tailed grackles in Tempe, Arizona to infer potential sex biases in dispersal. EcoEvoRxiv, osf.io/t6beh, ver. 5 peer-reviewed and recommended by Peer community in Ecology. doi: https://doi.org/10.32942/osf.io/t6beh | Investigating sex differences in genetic relatedness in great-tailed grackles in Tempe, Arizona to infer potential sex biases in dispersal | Sevchik, A., Logan, C. J., McCune, K. B., Blackwell, A., Rowney, C. and Lukas, D | <p>In most bird species, females disperse prior to their first breeding attempt, while males remain closer to the place they hatched for their entire lives. Explanations for such female bias in natal dispersal have focused on the resource-defense ... | ![]() | Behaviour & Ethology, Dispersal & Migration, Zoology | Emanuel A. Fronhofer | 2020-08-24 17:53:06 | View | |
24 Mar 2023
![]() Rapid literature mapping on the recent use of machine learning for wildlife imageryShinichi Nakagawa, Malgorzata Lagisz, Roxane Francis, Jessica Tam, Xun Li, Andrew Elphinstone, Neil R. Jordan, Justine K. O’Brien, Benjamin J. Pitcher, Monique Van Sluys, Arcot Sowmya, Richard T. Kingsford https://doi.org/10.32942/X2H59DReview of machine learning uses for the analysis of images on wildlifeRecommended by Olivier Gimenez based on reviews by Falk Huettmann and 1 anonymous reviewerIn the field of ecology, there is a growing interest in machine (including deep) learning for processing and automatizing repetitive analyses on large amounts of images collected from camera traps, drones and smartphones, among others. These analyses include species or individual recognition and classification, counting or tracking individuals, detecting and classifying behavior. By saving countless times of manual work and tapping into massive amounts of data that keep accumulating with technological advances, machine learning is becoming an essential tool for ecologists. We refer to recent papers for more details on machine learning for ecology and evolution (Besson et al. 2022, Borowiec et al. 2022, Christin et al. 2019, Goodwin et al. 2022, Lamba et al. 2019, Nazir & Kaleem 2021, Perry et al. 2022, Picher & Hartig 2023, Tuia et al. 2022, Wäldchen & Mäder 2018). In their paper, Nakagawa et al. (2023) conducted a systematic review of the literature on machine learning for wildlife imagery. Interestingly, the authors used a method unfamiliar to ecologists but well-established in medicine called rapid review, which has the advantage of being quickly completed compared to a fully comprehensive systematic review while being representative (Lagisz et al., 2022). Through a rigorous examination of more than 200 articles, the authors identified trends and gaps, and provided suggestions for future work. Listing all their findings would be counterproductive (you’d better read the paper), and I will focus on a few results that I have found striking, fully assuming a biased reading of the paper. First, Nakagawa et al. (2023) found that most articles used neural networks to analyze images, in general through collaboration with computer scientists. A challenge here is probably to think of teaching computer vision to the generations of ecologists to come (Cole et al. 2023). Second, the images were dominantly collected from camera traps, with an increase in the use of aerial images from drones/aircrafts that raise specific challenges. Third, the species concerned were mostly mammals and birds, suggesting that future applications should aim to mitigate this taxonomic bias, by including, e.g., invertebrate species. Fourth, most papers were written by authors affiliated with three countries (Australia, China, and the USA) while India and African countries provided lots of images, likely an example of scientific colonialism which should be tackled by e.g., capacity building and the involvement of local collaborators. Last, few studies shared their code and data, which obviously impedes reproducibility. Hopefully, with the journals’ policy of mandatory sharing of codes and data, this trend will be reversed. REFERENCES Besson M, Alison J, Bjerge K, Gorochowski TE, Høye TT, Jucker T, Mann HMR, Clements CF (2022) Towards the fully automated monitoring of ecological communities. Ecology Letters, 25, 2753–2775. https://doi.org/10.1111/ele.14123 Borowiec ML, Dikow RB, Frandsen PB, McKeeken A, Valentini G, White AE (2022) Deep learning as a tool for ecology and evolution. Methods in Ecology and Evolution, 13, 1640–1660. https://doi.org/10.1111/2041-210X.13901 Christin S, Hervet É, Lecomte N (2019) Applications for deep learning in ecology. Methods in Ecology and Evolution, 10, 1632–1644. https://doi.org/10.1111/2041-210X.13256 Cole E, Stathatos S, Lütjens B, Sharma T, Kay J, Parham J, Kellenberger B, Beery S (2023) Teaching Computer Vision for Ecology. https://doi.org/10.48550/arXiv.2301.02211 Goodwin M, Halvorsen KT, Jiao L, Knausgård KM, Martin AH, Moyano M, Oomen RA, Rasmussen JH, Sørdalen TK, Thorbjørnsen SH (2022) Unlocking the potential of deep learning for marine ecology: overview, applications, and outlook†. ICES Journal of Marine Science, 79, 319–336. https://doi.org/10.1093/icesjms/fsab255 Lagisz M, Vasilakopoulou K, Bridge C, Santamouris M, Nakagawa S (2022) Rapid systematic reviews for synthesizing research on built environment. Environmental Development, 43, 100730. https://doi.org/10.1016/j.envdev.2022.100730 Lamba A, Cassey P, Segaran RR, Koh LP (2019) Deep learning for environmental conservation. Current Biology, 29, R977–R982. https://doi.org/10.1016/j.cub.2019.08.016 Nakagawa S, Lagisz M, Francis R, Tam J, Li X, Elphinstone A, Jordan N, O’Brien J, Pitcher B, Sluys MV, Sowmya A, Kingsford R (2023) Rapid literature mapping on the recent use of machine learning for wildlife imagery. EcoEvoRxiv, ver. 4 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.32942/X2H59D Nazir S, Kaleem M (2021) Advances in image acquisition and processing technologies transforming animal ecological studies. Ecological Informatics, 61, 101212. https://doi.org/10.1016/j.ecoinf.2021.101212 Perry GLW, Seidl R, Bellvé AM, Rammer W (2022) An Outlook for Deep Learning in Ecosystem Science. Ecosystems, 25, 1700–1718. https://doi.org/10.1007/s10021-022-00789-y Pichler M, Hartig F Machine learning and deep learning—A review for ecologists. Methods in Ecology and Evolution, n/a. https://doi.org/10.1111/2041-210X.14061 Tuia D, Kellenberger B, Beery S, Costelloe BR, Zuffi S, Risse B, Mathis A, Mathis MW, van Langevelde F, Burghardt T, Kays R, Klinck H, Wikelski M, Couzin ID, van Horn G, Crofoot MC, Stewart CV, Berger-Wolf T (2022) Perspectives in machine learning for wildlife conservation. Nature Communications, 13, 792. https://doi.org/10.1038/s41467-022-27980-y Wäldchen J, Mäder P (2018) Machine learning for image-based species identification. Methods in Ecology and Evolution, 9, 2216–2225. https://doi.org/10.1111/2041-210X.13075 | Rapid literature mapping on the recent use of machine learning for wildlife imagery | Shinichi Nakagawa, Malgorzata Lagisz, Roxane Francis, Jessica Tam, Xun Li, Andrew Elphinstone, Neil R. Jordan, Justine K. O’Brien, Benjamin J. Pitcher, Monique Van Sluys, Arcot Sowmya, Richard T. Kingsford | <p>1. Machine (especially deep) learning algorithms are changing the way wildlife imagery is processed. They dramatically speed up the time to detect, count, classify animals and their behaviours. Yet, we currently have a very few systematic liter... | ![]() | Behaviour & Ethology, Conservation biology | Olivier Gimenez | Anonymous | 2022-10-31 22:05:46 | View |
13 Jul 2020
![]() Preregistration - The effect of dominance rank on female reproductive success in social mammalsShivani, Elise Huchard, Dieter Lukas https://dieterlukas.github.io/Preregistration_MetaAnalysis_RankSuccess.htmlWhy are dominant females not always showing higher reproductive success? A preregistration of a meta-analysis on social mammalsRecommended by Matthieu PaquetIn social species conflicts among group members typically lead to the formation of dominance hierarchies with dominant individuals outcompeting other groups members and, in some extreme cases, suppressing reproduction of subordinates. It has therefore been typically assumed that dominant individuals have a higher breeding success than subordinates. However, previous work on mammals (mostly primates) revealed high variation, with some populations showing no evidence for a link between female dominance reproductive success, and a meta-analysis on primates suggests that the strength of this relationship is stronger for species with a longer lifespan [1]. Therefore, there is now a need to understand 1) whether dominance and reproductive success are generally associated across social mammals (and beyond) and 2) which factors explains the variation in the strength (and possibly direction) of this relationship. References [1] Majolo, B., Lehmann, J., de Bortoli Vizioli, A., & Schino, G. (2012). Fitness‐related benefits of dominance in primates. American journal of physical anthropology, 147(4), 652-660. doi: 10.1002/ajpa.22031 | Preregistration - The effect of dominance rank on female reproductive success in social mammals | Shivani, Elise Huchard, Dieter Lukas | <p>Life in social groups, while potentially providing social benefits, inevitably leads to conflict among group members. In many social mammals, such conflicts lead to the formation of dominance hierarchies, where high-ranking individuals consiste... | ![]() | Behaviour & Ethology, Meta-analyses, Preregistrations, Social structure, Zoology | Matthieu Paquet | Bonaventura Majolo, Anonymous | 2020-04-06 17:42:37 | View |
02 Aug 2022
![]() The effect of dominance rank on female reproductive success in social mammalsShivani, Elise Huchard, Dieter Lukas https://doi.org/10.32942/osf.io/rc8naWhen do dominant females have higher breeding success than subordinates? A meta-analysis across social mammals.Recommended by Matthieu PaquetIn this meta-analysis, Shivani et al. [1] investigate 1) whether dominance and reproductive success are generally associated across social mammals and 2) whether this relationship varies according to a) life history traits (e.g., stronger for species with large litter size), b) ecological conditions (e.g., stronger when resources are limited) and c) the social environment (e.g., stronger for cooperative breeders than for plural breeders). Generally, the results are consistent with their predictions, except there was no clear support for this relationship to be conditional on the ecological conditions. considered As I have previously recommended the preregistration of this study [2,3], I do not have much to add here, as such recommendation should not depend on the outcome of the study. What I would like to recommend is the whole scientific process performed by the authors, from preregistration sent for peer review, to preprint submission and post-study peer review. It is particularly recommendable to notice that this project was a Masters student project, which shows that it is possible and worthy to preregister studies, even for such rather short-term projects. I strongly congratulate the authors for choosing this process even for an early career short-term project. I think it should be made possible for short-term students to conduct a preregistration study as a research project, without having to present post-study results. I hope this study can encourage a shift in the way we sometimes evaluate students’ projects. I also recommend the readers to look into the whole pre- and post- study reviewing history of this manuscript and the associated preregistration, as it provides a better understanding of the process and a good example of the associated challenges and benefits [4]. It was a really enriching experience and I encourage others to submit and review preregistrations and registered reports!
References [1] Shivani, Huchard, E., Lukas, D. (2022). The effect of dominance rank on female reproductive success in social mammals. EcoEvoRxiv, rc8na, ver. 10 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.32942/osf.io/rc8na [2] Shivani, Huchard, E., Lukas, D. (2020). Preregistration - The effect of dominance rank on female reproductive success in social mammals In principle acceptance by PCI Ecology of the version 1.2 on 07 July 2020. https://dieterlukas.github.io/Preregistration_MetaAnalysis_RankSuccess.html [3] Paquet, M. (2020) Why are dominant females not always showing higher reproductive success? A preregistration of a meta-analysis on social mammals. Peer Community in Ecology, 100056. https://doi.org/10.24072/pci.ecology.100056 [4] Parker, T., Fraser, H., & Nakagawa, S. (2019). Making conservation science more reliable with preregistration and registered reports. Conservation Biology, 33(4), 747-750. https://doi.org/10.1111/cobi.13342 | The effect of dominance rank on female reproductive success in social mammals | Shivani, Elise Huchard, Dieter Lukas | <p>Life in social groups, while potentially providing social benefits, inevitably leads to conflict among group members. In many social mammals, such conflicts lead to the formation of dominance hierarchies, where high-ranking individuals consiste... | ![]() | Behaviour & Ethology, Meta-analyses | Matthieu Paquet | 2021-10-13 18:26:42 | View | |
14 Jan 2021
Consistent variations in personality traits and their potential for genetic improvement of biocontrol agents: Trichogramma evanescens as a case studySilène Lartigue, Myriam Yalaoui, Jean Belliard, Claire Caravel, Louise Jeandroz, Géraldine Groussier, Vincent Calcagno, Philippe Louâpre, François-Xavier Dechaume-Moncharmont, Thibaut Malausa and Jérôme Moreau https://doi.org/10.1101/2020.08.21.257881Tell us how you can be, and we’ll make you better: exploiting genetic variability in personality traits to improve top-down control of agricultural pestsRecommended by Marta Montserrat based on reviews by Bart A Pannebakker, François Dumont, Joshua Patrick Byrne and Ana Pimenta Goncalves PereiraAgriculture in the XXI century faces the huge challenge of having to provide food to a rapidly growing human population, which is expected to reach 10.9 billion in 2100 (UUNN 2019), by means of practices and methods that guarantee crop sustainability, human health safety, and respect to the environment (UUNN 2015). Such regulation by the United Nations ultimately entails that agricultural scientists are urged to design strategies and methods that effectively minimize the use of harmful chemical products to control pest populations and to improve soil quality. References Bielza, P., Balanza, V., Cifuentes, D. and Mendoza, J. E. (2020). Challenges facing arthropod biological control: Identifying traits for genetic improvement of predators in protected crops. Pest Manag Sci. doi: https://doi.org/10.1002/ps.5857 | Consistent variations in personality traits and their potential for genetic improvement of biocontrol agents: Trichogramma evanescens as a case study | Silène Lartigue, Myriam Yalaoui, Jean Belliard, Claire Caravel, Louise Jeandroz, Géraldine Groussier, Vincent Calcagno, Philippe Louâpre, François-Xavier Dechaume-Moncharmont, Thibaut Malausa and Jérôme Moreau | <p>Improvements in the biological control of agricultural pests require improvements in the phenotyping methods used by practitioners to select efficient biological control agent (BCA) populations in industrial rearing or field conditions. Consist... | Agroecology, Behaviour & Ethology, Biological control, Evolutionary ecology, Life history | Marta Montserrat | 2020-08-24 10:40:03 | View |
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