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01 Feb 2020
Touchy matter: the delicate balance between Morgan’s canon and open-minded description of advanced cognitive skills in the animalRecommended by Francois-Xavier Dechaume-Moncharmont based on reviews by Valérie Dufour and Alex TaylorIn a recent paper published in PNAS, Fayet et al. [1] reported scarce field observations of two Atlantic puffins (four years apart) apparently scratching their bodies using sticks, which was interpreted by the authors as evidence of tool use in this species. In a short response, Benjamin Farrar [2] raises serious concerns about this interpretation and proposes simpler, more parsimonious, mechanisms explaining the observed behaviour: a textbook case of Morgan's canon. References [1] Fayet, A. L., Hansen, E. S., and Biro, D. (2020). Evidence of tool use in a seabird. Proceedings of the National Academy of Sciences, 117(3), 1277–1279. doi: 10.1073/pnas.1918060117 | Evidence of tool use in a seabird? | Benjamin G. Farrar | Fayet, Hansen and Biro (1) provide two observations of Atlantic puffins, *Fratercula arctica*, performing self-directed actions while holding a stick in their beaks. The authors interpret this as evidence of tool use as they suggest that the stick... | Behaviour & Ethology | Francois-Xavier Dechaume-Moncharmont | 2020-01-22 11:55:27 | View | ||
25 May 2021
Clumpy coexistence in phytoplankton: The role of functional similarity in community assemblyCaio Graco-Roza, Angel M. Segura, Carla Kruk, Patricia Domingos, Janne Soininen, Marcelo M. Marinho https://doi.org/10.1101/869966Environmental heterogeneity drives phytoplankton community assembly patterns in a tropical riverine systemRecommended by Cédric Hubas and Eric Goberville based on reviews by Eric Goberville and Dominique LamyWhat predisposes two individuals to form and maintain a relationship is a fundamental question. Using facial recognition to see whether couples' faces change over time to become more and more similar, psychology researchers have concluded that couples tend to be formed from the start between people whose faces are more similar than average [1]. As the saying goes, birds of a feather flock together. And what about in nature? Are these rules of assembly valid for communities of different species? In his seminal contribution, Robert MacArthur (1984) wrote ‘To do science is to search for repeated patterns’ [2]. Identifying the mechanisms that govern the arrangement of life is a hot research topic in the field of ecology for decades, and an absolutely essential prerequisite to answer the outstanding question of what shape ecological patterns in multi-species communities such as species-area relationships, relative species abundances, or spatial and temporal turnover of community composition; amid others [3]. To explain ecological patterns in nature, some rely on the concept that every species - through evolutionary processes and the acquisition of a unique set of traits that allow a species to be adapted to its abiotic and biotic environment - occupies a unique niche: Species coexistence comes as the result of niche differentiation [4,5]. Such a view has been challenged by the recognition of the key role of neutral processes [6], however, in which demographic stochasticity contributes to shape multi-species communities and to explain why congener species coexist much more frequently than expected by chance [7,8]. While the niche-based and neutral theories appear seemingly opposed at first sight [9], the dichotomy may be more philosophical than empirical [4,5]. Many examples have come to support that both concepts are not incompatible as they together influence the structure, diversity and functioning of communities [10], and are simply extreme cases of a continuum [11]. From this perspective, extrinsic factors, i.e., environmental heterogeneity, may influence the location of a given community along the niche-neutrality continuum. The walk of species in nature is therefore neither random nor ecologically predestined. In microbial assemblages, the co-existence of these two antagonistic mechanisms has been shown both theoretically and empirically. It has been shown that a combination of stabilising (niche) and equalising (neutral) mechanisms was responsible for the existence of groups of coexistent species (clumps) in a phytoplankton rich community [12]. Analysing interannual changes (2003-2009) in the weekly abundance of diatoms and dinoflagellates located in a temperate coastal ecosystem of the Western English Channel, Mutshinda et al. [13] found a mixture of biomass dynamics consistent with the neutrality-niche continuum hypothesis. While niche processes explained the dynamic of phytoplankton functional groups (i.e., diatoms vs. dinoflagellates) in terms of biomass, neutral processes mainly dominated - 50 to 75% of the time - the dynamics at the species level within functional groups [13]. From one endpoint to another, defining the location of a community along the continuum is all matter of scale [4,11]. In their study, testing predictions made by an emergent neutrality model, Graco-Roza et al. [14] provide empirical evidence that neutral and niche processes joined together to shape and drive planktonic communities in a riverine ecosystem. Body size - the 'master trait' - is used here as a discriminant ecological dimension along the niche axis. From their analysis, they not only show that the specific abundance is organised in clumps and gaps along the niche axis, but also reveal that different clumps exist along the river course. They identify two main clumps in body size - with species belonging to three different morphologically-based functional groups - and characterise that among-species differences in biovolume are driven by functional redundancy at the clump level; species functional distinctiveness being related to the relative biovolume of species. By grouping their variables according to seasons (cold-dry vs. warm-wet) or river elevation profile (upper, medium and lower course), they hereby highlight how environmental heterogeneity contributes to shape species assemblages and their dynamics and conclude that emergent neutrality models are a powerful approach to explain species coexistence; and therefore ecological patterns. References [1] Tea-makorn PP, Kosinski M (2020) Spouses’ faces are similar but do not become more similar with time. Scientific Reports, 10, 17001. https://doi.org/10.1038/s41598-020-73971-8. [2] MacArthur RH (1984) Geographical Ecology: Patterns in the Distribution of Species. Princeton University Press. [3] Vellend M (2020) The Theory of Ecological Communities (MPB-57). Princeton University Press. [4] Wennekes PL, Rosindell J, Etienne RS (2012) The Neutral—Niche Debate: A Philosophical Perspective. Acta Biotheoretica, 60, 257–271. https://doi.org/10.1007/s10441-012-9144-6. [5] Gravel D, Guichard F, Hochberg ME (2011) Species coexistence in a variable world. Ecology Letters, 14, 828–839. https://doi.org/10.1111/j.1461-0248.2011.01643.x. [6] Hubbell SP (2001) The Unified Neutral Theory of Biodiversity and Biogeography (MPB-32). Princeton University Press. [7] Leibold MA, McPeek MA (2006) Coexistence of the Niche and Neutral Perspectives in Community Ecology. Ecology, 87, 1399–1410. https://doi.org/10.1890/0012-9658(2006)87[1399:COTNAN]2.0.CO;2. [8] Pielou EC (1977) The Latitudinal Spans of Seaweed Species and Their Patterns of Overlap. Journal of Biogeography, 4, 299–311. https://doi.org/10.2307/3038189. [9] Holt RD (2006) Emergent neutrality. Trends in Ecology & Evolution, 21, 531–533. https://doi.org/10.1016/j.tree.2006.08.003. [10] Scheffer M, Nes EH van (2006) Self-organized similarity, the evolutionary emergence of groups of similar species. Proceedings of the National Academy of Sciences, 103, 6230–6235. https://doi.org/10.1073/pnas.0508024103. [11] Gravel D, Canham CD, Beaudet M, Messier C (2006) Reconciling niche and neutrality: the continuum hypothesis. Ecology Letters, 9, 399–409. https://doi.org/10.1111/j.1461-0248.2006.00884.x. [12] Vergnon R, Dulvy NK, Freckleton RP (2009) Niches versus neutrality: uncovering the drivers of diversity in a species-rich community. Ecology Letters, 12, 1079–1090. https://doi.org/10.1111/j.1461-0248.2009.01364.x. [13] Mutshinda CM, Finkel ZV, Widdicombe CE, Irwin AJ (2016) Ecological equivalence of species within phytoplankton functional groups. Functional Ecology, 30, 1714–1722. https://doi.org/10.1111/1365-2435.12641. [14] Graco-Roza C, Segura AM, Kruk C, Domingos P, Soininen J, Marinho MM (2021) Clumpy coexistence in phytoplankton: The role of functional similarity in community assembly. bioRxiv, 869966, ver. 6 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/869966
| Clumpy coexistence in phytoplankton: The role of functional similarity in community assembly | Caio Graco-Roza, Angel M. Segura, Carla Kruk, Patricia Domingos, Janne Soininen, Marcelo M. Marinho | <p style="text-align: justify;">Emergent neutrality (EN) suggests that species must be sufficiently similar or sufficiently different in their niches to avoid interspecific competition. Such a scenario results in a transient pattern with clumps an... | Coexistence, Community ecology, Theoretical ecology | Cédric Hubas | 2020-01-23 16:11:32 | View | ||
21 Nov 2023
Pathogen community composition and co-infection patterns in a wild community of rodentsJessica Lee Abbate, Maxime Galan, Maria Razzauti, Tarja Sironen, Liina Voutilainen, Heikki Henttonen, Patrick Gasqui, Jean-François Cosson, Nathalie Charbonnel https://doi.org/10.1101/2020.02.09.940494Reservoirs of pestilence: what pathogen and rodent community analyses can tell us about transmission riskRecommended by Francois Massol based on reviews by Adrian Diaz, Romain Pigeault and 1 anonymous reviewerRodents are well known as one of the main animal groups responsible for human-transmitted pathogens. As such, it seems logical to try and survey what kinds of pathogenic microbes might be harboured by wild rodents, in order to establish some baseline surveillance and prevent future zoonotic outbreaks (Bernstein et al., 2022). This is exactly what Abbate et al. (2023) endeavoured and their findings are intimidating. Based on quite a large sampling effort, they collected more than 700 rodents of seven species around two villages in northeastern France. They looked for molecular markers indicative of viral and bacterial infections and proceeded to analyze their pathogen communities using multivariate techniques. Variation in the prevalence of the different pathogens was found among host species, with e.g. signs of CPXV more prevalent in Cricetidae while some Mycoplasma strains were more prevalent in Muridae. Co-circulation of pathogens was found in all species, with some evidencing signs of up to 12 different pathogen taxa. The diversity of co-circulating pathogens was markedly different between host species and higher in adult hosts, but not affected by sex. The dataset also evinced some slight differences between habitats, with meadows harbouring a little more diversity of rodent pathogens than forests. Less intuitively, some pathogen associations seemed quite repeatable, such as the positive association of Bartonella spp. with CPXV in the montane water vole. The study allowed the authors to test several associations already described in the literature, including associations between different hemotropic Mycoplasma species. I strongly invite colleagues interested in zoonoses, emerging pandemics and more generally One Health to read the paper of Abbate et al. (2023) and try to replicate them across the world. To prevent the next sanitary crises, monitoring rodents, and more generally vertebrates, population demographics is a necessary and enlightening step (Johnson et al., 2020), but insufficient. Following the lead of colleagues working on rodent ectoparasites (Krasnov et al., 2014), we need more surveys like the one described by Abbate et al. (2023) to understand the importance of the dilution effect in the prevalence and transmission of microbial pathogens (Andreazzi et al., 2023) and the formation of epidemics. We also need other similar studies to assess the potential of different rodent species to carry pathogens more or less capable of infecting other mammalian species (Morand et al., 2015), in other places in the world. References Abbate, J. L., Galan, M., Razzauti, M., Sironen, T., Voutilainen, L., Henttonen, H., Gasqui, P., Cosson, J.-F. & Charbonnel, N. (2023) Pathogen community composition and co-infection patterns in a wild community of rodents. BioRxiv, ver.4 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2020.02.09.940494 Andreazzi, C. S., Martinez-Vaquero, L. A., Winck, G. R., Cardoso, T. S., Teixeira, B. R., Xavier, S. C. C., Gentile, R., Jansen, A. M. & D'Andrea, P. S. (2023) Vegetation cover and biodiversity reduce parasite infection in wild hosts across ecological levels and scales. Ecography, 2023, e06579. | Pathogen community composition and co-infection patterns in a wild community of rodents | Jessica Lee Abbate, Maxime Galan, Maria Razzauti, Tarja Sironen, Liina Voutilainen, Heikki Henttonen, Patrick Gasqui, Jean-François Cosson, Nathalie Charbonnel | <p style="text-align: justify;">Rodents are major reservoirs of pathogens that can cause disease in humans and livestock. It is therefore important to know what pathogens naturally circulate in rodent populations, and to understand the factors tha... | Biodiversity, Coexistence, Community ecology, Eco-immunology & Immunity, Epidemiology, Host-parasite interactions, Population ecology, Species distributions | Francois Massol | 2020-02-11 12:42:28 | View | ||
19 Dec 2020
Hough transform implementation to evaluate the morphological variability of the moon jellyfish (Aurelia spp.)Céline Lacaux, Agnès Desolneux, Justine Gadreaud, Bertrand Martin-Garin and Alain Thiéry https://doi.org/10.1101/2020.03.11.986984A new member of the morphometrics jungle to better monitor vulnerable lagoonsRecommended by Vincent Bonhomme based on reviews by Julien Claude and 1 anonymous reviewerIn the recent years, morphometrics, the quantitative description of shape and its covariation [1] gained considerable momentum in evolutionary ecology. Using the form of organisms to describe, classify and try to understand their diversity can be traced back at least to Aristotle. More recently, two successive revolutions rejuvenated this idea [1–3]: first, a proper mathematical refoundation of the theory of shape, then a technical revolution in the apparatus able to acquire raw data. By using a feature extraction method and planning its massive use on data acquired by aerial drones, the study by Lacaux and colleagues [4] retraces this curse of events. The sample sizes studied here were too low to allow finer-grained ecophysiological investigations. That being said, the proof-of-concept is convincing and this paper paths the way for an operational and innovative approach to the ecological monitoring of sensible aquatic ecosystems. References [1] Kendall, D. G. (1989). A survey of the statistical theory of shape. Statistical Science, 87-99. doi: https://doi.org/10.1214/ss/1177012589 | Hough transform implementation to evaluate the morphological variability of the moon jellyfish (Aurelia spp.) | Céline Lacaux, Agnès Desolneux, Justine Gadreaud, Bertrand Martin-Garin and Alain Thiéry | <p>Variations of the animal body plan morphology and morphometry can be used as prognostic tools of their habitat quality. The potential of the moon jellyfish (Aurelia spp.) as a new model organism has been poorly tested. However, as a tetramerous... | Morphometrics | Vincent Bonhomme | 2020-03-18 17:40:51 | View | ||
11 Mar 2021
Size-dependent eco-evolutionary feedbacks in fisheriesEric Edeline and Nicolas Loeuille https://doi.org/10.1101/2020.04.03.022905“Hidden” natural selection and the evolution of body size in harvested stocksRecommended by Simon Blanchet based on reviews by Jean-François Arnoldi and 1 anonymous reviewerHumans are exploiting biological resources since thousands of years. Exploitation of biological resources has become particularly intense since the beginning of the 20th century and the steep increase in the worldwide human population size. Marine and freshwater fishes are not exception to that rule, and they have been (and continue to be) strongly harvested as a source of proteins for humans. For some species, fishery has been so intense that natural stocks have virtually collapsed in only a few decades. The worst example begin that of the Northwest Atlantic cod that has declined by more than 95% of its historical biomasses in only 20-30 years of intensive exploitation (Frank et al. 2005). These rapid and steep changes in biomasses have huge impacts on the entire ecosystems since species targeted by fisheries are often at the top of trophic chains (Frank et al. 2005). Beyond demographic impacts, fisheries also have evolutionary impacts on populations, which can also indirectly alter ecosystems (Uusi-Heikkilä et al. 2015; Palkovacs et al. 2018). Fishermen generally focus on the largest specimens, and hence exert a strong selective pressure against these largest fish (which is called “harvest selection”). There is now ample evidence that harvest selection can lead to rapid evolutionary changes in natural populations toward small individuals (Kuparinen & Festa-Bianchet 2017). These evolutionary changes are of course undesirable from a human perspective, and have attracted many scientific questions. Nonetheless, the consequence of harvest selection is not always observable in natural populations, and there are cases in which no phenotypic change (or on the contrary an increase in mean body size) has been observed after intense harvest pressures. In a conceptual Essay, Edeline and Loeuille (Edeline & Loeuille 2020) propose novel ideas to explain why the evolutionary consequences of harvest selection can be so diverse, and how a cross talk between ecological and evolutionary dynamics can explain patterns observed in natural stocks. The general and novel concept proposed by Edeline and Loeuille is actually as old as Darwin’s book; The Origin of Species (Darwin 1859). It is based on the simple idea that natural selection acting on harvested populations can actually be strong, and counter-balance (or on the contrary reinforce) the evolutionary consequence of harvest selection. Although simple, the idea that natural and harvest selection are jointly shaping contemporary evolution of exploited populations lead to various and sometimes complex scenarios that can (i) explain unresolved empirical patterns and (ii) refine predictions regarding the long-term viability of exploited populations. The Edeline and Loeuille’s crafty inspiration is that natural selection acting on exploited populations is itself an indirect consequence of harvest (Edeline & Loeuille 2020). They suggest that, by modifying the size structure of populations (a key parameter for ecological interactions), harvest indirectly alters interactions between populations and their biotic environment through competition and predation, which changes the ecological theatre and hence the selective pressures acting back to populations. They named this process “size-dependent eco-evolutionary feedback loops” and develop several scenarios in which these feedback loops ultimately deviate the evolutionary outcome of harvest selection from expectation. The scenarios they explore are based on strong theoretical knowledge, and range from simple ones in which a single species (the harvest species) is evolving to more complex (and realistic) ones in which multiple (e.g. the harvest species and its prey) species are co-evolving. I will not come into the details of each scenario here, and I will let the readers (re-)discovering the complex beauty of biological life and natural selection. Nonetheless, I will emphasize the importance of considering these eco-evolutionary processes altogether to fully grasp the response of exploited populations. Edeline and Loeuille convincingly demonstrate that reduced body size due to harvest selection is obviously not the only response of exploited fish populations when natural selection is jointly considered (Edeline & Loeuille 2020). On the contrary, they show that –under some realistic ecological circumstances relaxing exploitative competition due to reduced population densities- natural selection can act antagonistically, and hence favour stable body size in exploited populations. Although this seems further desirable from a human perspective than a downsizing of exploited populations, it is actually mere window dressing as Edeline and Loeuille further showed that this response is accompanied by an erosion of the evolvability –and hence a lowest probability of long-term persistence- of these exploited populations. Humans, by exploiting biological resources, are breaking the relative equilibrium of complex entities, and the response of populations to this disturbance is itself often complex and heterogeneous. In this Essay, Edeline and Loeuille provide –under simple terms- the theoretical and conceptual bases required to improve predictions regarding the evolutionary responses of natural populations to exploitation by humans (Edeline & Loeuille 2020). An important next step will be to generate data and methods allowing confronting the empirical reality to these novel concepts (e.g. (Monk et al. 2021), so as to identify the most likely evolutionary scenarios sustaining biological responses of exploited populations, and hence to set the best management plans for the long-term sustainability of these populations. References Darwin, C. (1859). On the Origin of Species by Means of Natural Selection. John Murray, London. Edeline, E. & Loeuille, N. (2021) Size-dependent eco-evolutionary feedbacks in fisheries. bioRxiv, 2020.04.03.022905, ver. 4 peer-reviewed and recommended by PCI Ecology. doi: https://doi.org/10.1101/2020.04.03.022905 Frank, K.T., Petrie, B., Choi, J. S. & Leggett, W.C. (2005). Trophic Cascades in a Formerly Cod-Dominated Ecosystem. Science, 308, 1621–1623. doi: https://doi.org/10.1126/science.1113075 Kuparinen, A. & Festa-Bianchet, M. (2017). Harvest-induced evolution: insights from aquatic and terrestrial systems. Philos. Trans. R. Soc. B Biol. Sci., 372, 20160036. doi: https://doi.org/10.1098/rstb.2016.0036 Monk, C.T., Bekkevold, D., Klefoth, T., Pagel, T., Palmer, M. & Arlinghaus, R. (2021). The battle between harvest and natural selection creates small and shy fish. Proc. Natl. Acad. Sci., 118, e2009451118. doi: https://doi.org/10.1073/pnas.2009451118 Palkovacs, E.P., Moritsch, M.M., Contolini, G.M. & Pelletier, F. (2018). Ecology of harvest-driven trait changes and implications for ecosystem management. Front. Ecol. Environ., 16, 20–28. doi: https://doi.org/10.1002/fee.1743 Uusi-Heikkilä, S., Whiteley, A.R., Kuparinen, A., Matsumura, S., Venturelli, P.A., Wolter, C., et al. (2015). The evolutionary legacy of size-selective harvesting extends from genes to populations. Evol. Appl., 8, 597–620. doi: https://doi.org/10.1111/eva.12268 | Size-dependent eco-evolutionary feedbacks in fisheries | Eric Edeline and Nicolas Loeuille | <p>Harvesting may drive body downsizing along with population declines and decreased harvesting yields. These changes are commonly construed as direct consequences of harvest selection, where small-bodied, early-reproducing individuals are immedia... | Biodiversity, Community ecology, Competition, Eco-evolutionary dynamics, Evolutionary ecology, Food webs, Interaction networks, Life history, Population ecology, Theoretical ecology | Simon Blanchet | 2020-04-03 16:14:05 | View | ||
13 Jul 2020
Preregistration - The effect of dominance rank on female reproductive success in social mammalsShivani, Elise Huchard, Dieter Lukas https://dieterlukas.github.io/Preregistration_MetaAnalysis_RankSuccess.htmlWhy are dominant females not always showing higher reproductive success? A preregistration of a meta-analysis on social mammalsRecommended by Matthieu Paquet based on reviews by Bonaventura Majolo and 1 anonymous reviewerIn social species conflicts among group members typically lead to the formation of dominance hierarchies with dominant individuals outcompeting other groups members and, in some extreme cases, suppressing reproduction of subordinates. It has therefore been typically assumed that dominant individuals have a higher breeding success than subordinates. However, previous work on mammals (mostly primates) revealed high variation, with some populations showing no evidence for a link between female dominance reproductive success, and a meta-analysis on primates suggests that the strength of this relationship is stronger for species with a longer lifespan [1]. Therefore, there is now a need to understand 1) whether dominance and reproductive success are generally associated across social mammals (and beyond) and 2) which factors explains the variation in the strength (and possibly direction) of this relationship. References [1] Majolo, B., Lehmann, J., de Bortoli Vizioli, A., & Schino, G. (2012). Fitness‐related benefits of dominance in primates. American journal of physical anthropology, 147(4), 652-660. doi: 10.1002/ajpa.22031 | Preregistration - The effect of dominance rank on female reproductive success in social mammals | Shivani, Elise Huchard, Dieter Lukas | <p>Life in social groups, while potentially providing social benefits, inevitably leads to conflict among group members. In many social mammals, such conflicts lead to the formation of dominance hierarchies, where high-ranking individuals consiste... | Behaviour & Ethology, Meta-analyses, Preregistrations, Social structure, Zoology | Matthieu Paquet | Bonaventura Majolo, Anonymous | 2020-04-06 17:42:37 | View | |
12 Oct 2020
Insect herbivory on urban trees: Complementary effects of tree neighbours and predationAlex Stemmelen, Alain Paquette, Marie-Lise Benot, Yasmine Kadiri, Hervé Jactel, Bastien Castagneyrol https://doi.org/10.1101/2020.04.15.042317Tree diversity is associated with reduced herbivory in urban forestRecommended by Ruth Arabelle Hufbauer and Ian Pearse based on reviews by Ian Pearse and Freerk MollemanUrban ecology, the study of ecological systems in our increasingly urbanized world, is crucial to planning and redesigning cities to enhance ecosystem services (Kremer et al. 2016), human health and well-being and further conservation goals (Dallimer et al. 2012). Urban trees are a crucial component of urban streets and parks that provide shade and cooling through evapotranspiration (Fung and Jim 2019), improve air quality (Lai and Kontokosta 2019), help control storm water (Johnson and Handel 2016), and conserve wildlife (Herrmann et al. 2012; de Andrade et al. 2020). References Airola, D. and Greco, S. (2019). Birds and oaks in California’s urban forest. Int. Oaks, 30, 109–116. | Insect herbivory on urban trees: Complementary effects of tree neighbours and predation | Alex Stemmelen, Alain Paquette, Marie-Lise Benot, Yasmine Kadiri, Hervé Jactel, Bastien Castagneyrol | <p>Insect herbivory is an important component of forest ecosystems functioning and can affect tree growth and survival. Tree diversity is known to influence insect herbivory in natural forest, with most studies reporting a decrease in herbivory wi... | Biodiversity, Biological control, Community ecology, Ecosystem functioning, Herbivory | Ruth Arabelle Hufbauer | 2020-04-20 13:49:36 | View | ||
06 Oct 2020
Implementing a rapid geographic range expansion - the role of behavior and habitat changesLogan CJ, McCune KB, Chen N, Lukas D http://corinalogan.com/Preregistrations/gxpopbehaviorhabitat.htmlThe role of behavior and habitat availability on species geographic expansionRecommended by Esther Sebastián González based on reviews by Caroline Marie Jeanne Yvonne Nieberding, Pizza Ka Yee Chow, Tim Parker and 1 anonymous reviewerUnderstanding the relative importance of species-specific traits and environmental factors in modulating species distributions is an intriguing question in ecology [1]. Both behavioral flexibility (i.e., the ability to change the behavior in changing circumstances) and habitat availability are known to influence the ability of a species to expand its geographic range [2,3]. However, the role of each factor is context and species dependent and more information is needed to understand how these two factors interact. In this pre-registration, Logan et al. [4] explain how they will use Great-tailed grackles (Quiscalus mexicanus), a species with a flexible behavior and a rapid geographic range expansion, to evaluate the relative role of habitat and behavior as drivers of the species’ expansion [4]. The authors present very clear hypotheses, predicted results and also include alternative predictions. The rationales for all the hypotheses are clearly stated, and the methodology (data and analyses plans) are described with detail. The large amount of information already collected by the authors for the studied species during previous projects warrants the success of this study. It is also remarkable that the authors will make all their data available in a public repository, and that the pre-registration in already stored in GitHub, supporting open access and reproducible science. I agree with the three reviewers of this pre-registration about its value and I think its quality has largely improved during the review process. Thus, I am happy to recommend it and I am looking forward to seeing the results. References [1] Gaston KJ. 2003. The structure and dynamics of geographic ranges. Oxford series in Ecology and Evolution. Oxford University Press, New York. [2] Sol D, Lefebvre L. 2000. Behavioural flexibility predicts invasion success in birds introduced to new zealand. Oikos. 90(3): 599–605. https://doi.org/10.1034/j.1600-0706.2000.900317.x [3] Hanski I, Gilpin M. 1991. Metapopulation dynamics: Brief history and conceptual domain. Biological journal of the Linnean Society. 42(1-2): 3–16. https://doi.org/10.1111/j.1095-8312.1991.tb00548.x [4] Logan CJ, McCune KB, Chen N, Lukas D. 2020. Implementing a rapid geographic range expansion - the role of behavior and habitat changes (http://corinalogan.com/Preregistrations/gxpopbehaviorhabitat.html) In principle acceptance by PCI Ecology of the version on 16 Dec 2021 https://github.com/corinalogan/grackles/blob/0fb956040a34986902a384a1d8355de65010effd/Files/Preregistrations/gxpopbehaviorhabitat.Rmd. | Implementing a rapid geographic range expansion - the role of behavior and habitat changes | Logan CJ, McCune KB, Chen N, Lukas D | <p>It is generally thought that behavioral flexibility, the ability to change behavior when circumstances change, plays an important role in the ability of a species to rapidly expand their geographic range (e.g., Lefebvre et al. (1997), Griffin a... | Behaviour & Ethology, Biological invasions, Dispersal & Migration, Foraging, Habitat selection, Human impact, Phenotypic plasticity, Preregistrations, Zoology | Esther Sebastián González | Anonymous, Caroline Marie Jeanne Yvonne Nieberding, Tim Parker | 2020-05-14 11:18:57 | View | |
21 Oct 2020
Why scaling up uncertain predictions to higher levels of organisation will underestimate changeJames Orr, Jeremy Piggott, Andrew Jackson, Jean-François Arnoldi https://doi.org/10.1101/2020.05.26.117200Uncertain predictions of species responses to perturbations lead to underestimate changes at ecosystem level in diverse systemsRecommended by Elisa Thebault based on reviews by Carlos Melian and 1 anonymous reviewerDifferent sources of uncertainty are known to affect our ability to predict ecological dynamics (Petchey et al. 2015). However, the consequences of uncertainty on prediction biases have been less investigated, especially when predictions are scaled up to higher levels of organisation as is commonly done in ecology for instance. The study of Orr et al. (2020) addresses this issue. It shows that, in complex systems, the uncertainty of unbiased predictions at a lower level of organisation (e.g. species level) leads to a bias towards underestimation of change at higher level of organisation (e.g. ecosystem level). This bias is strengthened by larger uncertainty and by higher dimensionality of the system. References Cardinale BJ, Duffy JE, Gonzalez A, Hooper DU, Perrings C, Venail P, Narwani A, Mace GM, Tilman D, Wardle DA, Kinzig AP, Daily GC, Loreau M, Grace JB, Larigauderie A, Srivastava DS, Naeem S (2012) Biodiversity loss and its impact on humanity. Nature, 486, 59–67. https://doi.org/10.1038/nature11148 | Why scaling up uncertain predictions to higher levels of organisation will underestimate change | James Orr, Jeremy Piggott, Andrew Jackson, Jean-François Arnoldi | <p>Uncertainty is an irreducible part of predictive science, causing us to over- or underestimate the magnitude of change that a system of interest will face. In a reductionist approach, we may use predictions at the level of individual system com... | Community ecology, Ecosystem functioning, Theoretical ecology | Elisa Thebault | Anonymous | 2020-06-02 15:41:12 | View | |
30 Sep 2020
How citizen science could improve Species Distribution Models and their independent assessmentFlorence Matutini, Jacques Baudry, Guillaume Pain, Morgane Sineau, Josephine Pithon https://doi.org/10.1101/2020.06.02.129536Citizen science contributes to SDM validationRecommended by Francisco Lloret based on reviews by Maria Angeles Perez-Navarro and 1 anonymous reviewerCitizen science is becoming an important piece for the acquisition of scientific knowledge in the fields of natural sciences, and particularly in the inventory and monitoring of biodiversity (McKinley et al. 2017). The information generated with the collaboration of citizens has an evident importance in conservation, by providing information on the state of populations and habitats, helping in mitigation and restoration actions, and very importantly contributing to involve society in conservation (Brown and Williams 2019).
An obvious advantage of these initiatives is the ability to mobilize human resources on a large territorial scale and in the medium term, which would otherwise be difficult to finance. The resulting increasing information then can be processed with advanced computational techniques (Hochachka et al 2012; Kelling et al. 2015), thus improving our interpretation of the distribution of species. Specifically, the ability to obtain information on a large territorial scale can be integrated into studies based on Species Distribution Models SDMs. One of the common problems with SDMs is that they often work from species occurrences that have been opportunistically recorded, either by professionals or amateurs. A great challenge for data obtained from non-professional citizens, however, remains to ensure its standardization and quality (Kosmala et al. 2016). This requires a clear and effective design, solid volunteer training, and a high level of coordination that turns out to be complex (Brown and Williams 2019). Finally, it is essential to perform a quality validation following scientifically recognized standards, since they are often conditioned by errors and biases in obtaining information (Bird et al. 2014). There are two basic approaches to obtain the necessary data for this validation: getting it from an external source (external validation), or allocating a part of the database itself (internal validation or cross-validation) to this function. References [1] Bird TJ et al. (2014) Statistical solutions for error and bias in global citizen science datasets. Biological Conservation 173: 144-154. doi: 10.1016/j.biocon.2013.07.037 | How citizen science could improve Species Distribution Models and their independent assessment | Florence Matutini, Jacques Baudry, Guillaume Pain, Morgane Sineau, Josephine Pithon | <p>Species distribution models (SDM) have been increasingly developed in recent years but their validity is questioned. Their assessment can be improved by the use of independent data but this can be difficult to obtain and prohibitive to collect.... | Biodiversity, Biogeography, Conservation biology, Habitat selection, Spatial ecology, Metacommunities & Metapopulations, Species distributions, Statistical ecology | Francisco Lloret | 2020-06-03 09:36:34 | View |
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