MARSH Charles J's profile
avatar

MARSH Charles JORCID_LOGO

  • -, -, -, United Kingdom
  • Community ecology, Spatial ecology, Metacommunities & Metapopulations, Species distributions, Statistical ecology, Tropical ecology

Recommendations:  0

Review:  1

Areas of expertise
Spatial ecology, fragmentation, beta-diversity, species distributions, spatial scale

Review:  1

03 Jan 2024
article picture

Efficient sampling designs to assess biodiversity spatial autocorrelation : should we go fractal?

Spatial patterns and autocorrelation challenges in ecological conservation

Recommended by based on reviews by Nigel Yoccoz and Charles J Marsh

Pattern, like beauty, is to some extent in the eye of the beholder” (Grant 1977 in Wiens, 1989)

Ecologists are immersed in unraveling the complex spatial patterns that govern species diversity, driven by both practical and theoretical imperatives (Rahbek, 2005; Wang et al., 2019). This dual focus necessitates a practical imperative for strategic biodiversity conservation, requiring a nuanced understanding of locations with peak species richness and dynamic shifts in species assemblages (Chase et al., 2020). Simultaneously, there is a theoretical interest in using diversity patterns as empirical testing grounds for theories explaining factors influencing diversity disparities and the associated increase in species turnover correlated with inter-site distance (Condit et al., 2002).
 
McGill (2010), in his paper "Matters of Scale", highlights the scale-dependent nature of ecology, aligning with the recognition that spatial autocorrelation is inherent in biogeographical data and often correlated with sample size (Rahbek, 2005). Spatial autocorrelation, often underestimated in ecological studies (Dormann, 2007), occurs when proximate locations exhibit similarities in ecological attributes (Tobler, 1970; Getis, 2010), introducing a latent bias that compromises the robustness of ecological findings (Dormann, 2007; Dormann et al., 2007). This phenomenon serves as both an asset, providing valuable information for inferring processes from patterns (Palma et al. 1999), and a challenge, imposing limitations on hypothesis testing and prediction (Dormann et al., 2007 and references therein). Various factors contribute to spatial autocorrelation, with three primary contributors (Dormann et al., 2007; Legendre, 1993; Legendre and Fortin, 1989; Legendre and Legendre, 2012): (i) distance-related effects in biological processes, (ii) misrepresentation of non-linear relationships between the environment and species as linear and (iii) the oversight of a crucial spatially structured environmental determinant in the statistical model, leading to spatial structuring in the response (Dormann et al., 2007).
 
Recognising the pivotal role of spatial heterogeneity in ecological theories (Wang et al., 2019), it becomes imperative to discern and address the limitations introduced by spatial autocorrelation (Legendre, 1993). McGill (2011) emphasises that the ultimate goal of biodiversity pattern studies should be to develop a quantitative predictive theory useful for conservation. The spatial dimension's importance in study planning, determining the system's scale, appropriate quadrat size, and spacing between sampling stations, is paramount (Fortin, 1999a,b). Responses to these considerations are intricately linked with study objectives and insights from pre-sampling campaigns, underscoring the need for a nuanced and rigorous approach (Delmelle, 2021).
 
Understanding statistical techniques and nested sampling designs is crucial to answering fundamental ecological questions (Dormann et al., 2007; McDonald, 2012). In addressing spatial autocorrelation challenges, ecologists must recognize the limitations of many standard statistical methods in ecological studies (Dale and Fortin, 2002; Legendre and Fortin, 1989; Steel et al., 2013). In the initial phases of description or hypothesis generation, ecologists should proactively acknowledge the spatial structure in their data and conduct tests for spatial autocorrelation (for a comprehensive description, see Legendre and Fortin, 1989): various tools, including correlograms, spectral analysis, the Mantel test, and clustering methods, facilitate the assessment and description of spatial structures. The partial Mantel test enables the study of causal models with space as an explanatory variable. Techniques for mapping ecological variables, such as interpolation, trend surface analysis, and constrained clustering, yield maps providing valuable insights into the spatial dynamics of ecological systems.
 
This refined consideration of spatial autocorrelation emerges as an imperative in ecological research, fostering a deeper and more precise understanding of the intricate interplay between species diversity, spatial patterns, and the inherent limitations imposed by spatial autocorrelation (Legendre et al., 2002). This not only contributes significantly to the scientific discourse in ecology but also aligns with McGill's vision of developing predictive theories for effective conservation (Bacaro et al., 2016; McGill, 2011).
 
In this study by Fabien Laroche (2023), titled “Efficient sampling designs to assess biodiversity spatial autocorrelation: should we go fractal?” the primary focus was on addressing the challenges associated with estimating the autocorrelation range of species distribution across spatial scales. The study aimed to explore alternative sampling designs, with a particular focus on the application of fractal designs—self-similar designs with well-identified scales. The overarching goal was to evaluate whether fractal designs could offer a more efficient compromise compared to traditional hybrid designs, which involve mixing random sampling points with a systematic grid.
 
Virtual ecology provides a way to test whether sampling designs can accurately detect or quantify effects of interest before implementing them in the field. Beyond the question of assessing the power of empirical designs, a virtual ecology analysis contributes to clearly formulating the set of questions associated with a design. However, only a few virtual studies have focused on efficient designs to accurately estimate the autocorrelation range of biodiversity variables. In this study, the statistical framework of optimal design of experiments was employed—a methodology often used in building and comparing designs of temporal or spatiotemporal biodiversity surveys but rarely applied to the specific problem of quantifying spatial autocorrelation.
 
Key findings from the study shed light on optimal sampling strategies, with a notable dependence on the feasible grid mesh size over the study area in relation to expected autocorrelation range values. The results demonstrated that the efficiency of designs varied based on the specific effect under study. Fractal designs, however, exhibited superior performance, particularly when assessing the effect of a monotonic environmental gradient across space.
 
In conclusion, the study provides valuable insights into the potential benefits of incorporating fractal designs in biodiversity studies, offering a nuanced and efficient approach to estimate spatial autocorrelation. These findings contribute significantly to the ongoing scientific discourse in ecology, providing practical considerations for improving sampling designs in biodiversity assessments.
 
References
 
Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M.W., Ricotta, C., Rocchini, D., Scheiner, S.M., Tordoni, E., Chiarucci, A., 2016. Incorporating spatial autocorrelation in rarefaction methods: Implications for ecologists and conservation biologists. Ecological Indicators 69, 233-238. https://doi.org/10.1016/j.ecolind.2016.04.026
 
Chase, J.M., Jeliazkov, A., Ladouceur, E., Viana, D.S., 2020. Biodiversity conservation through the lens of metacommunity ecology. Annals of the New York Academy of Sciences 1469, 86-104. https://doi.org/10.1111/nyas.14378
 
Condit, R., Pitman, N., Leigh, E.G., Chave, J., Terborgh, J., Foster, R.B., Núñez, P., Aguilar, S., Valencia, R., Villa, G., Muller-Landau, H.C., Losos, E., Hubbell, S.P., 2002. Beta-Diversity in Tropical Forest Trees. Science 295, 666-669. https://doi.org/10.1126/science.1066854
 
Dale, M.R.T., Fortin, M.-J., 2002. Spatial autocorrelation and statistical tests in ecology. Écoscience 9, 162-167. https://doi.org/10.1080/11956860.2002.11682702
 
Delmelle, E.M., 2021. Spatial Sampling, in: Fischer, M.M., Nijkamp, P. (Eds.), Handbook of Regional Science. Springer Berlin Heidelberg, Berlin, Heidelberg, pp. 1829-1844.
 
Dormann, C.F., 2007. Effects of incorporating spatial autocorrelation into the analysis of species distribution data. Global Ecology & Biogeography 16, 129-128. https://doi.org/10.1111/j.1466-8238.2006.00279.x
 
Dormann, C.F., McPherson, J.M., Araújo, M.B., Bivand, R., Bolliger, J., Carl, G., Davies, R.G., Hirzel, A., Jetz, W., Kissling, W.D., Kühn, I., Ohlemüler, R., Peres-Neto, P.R., Reineking, B., Schröder, B., Schurr, F.M., Wilson, R., 2007. Methods to account for spatial autocorrelation in the analysis of species distributional data: a review. Ecography 33, 609-628. https://doi.org/10.1111/j.2007.0906-7590.05171.x
 
Fortin, M.-J., 1999a. Effects of quadrat size and data measurement on the detection of boundaries. Journal of Vegetation Science 10, 43-50. https://doi.org/10.2307/3237159
 
Fortin, M.-J., 1999b. Effects of sampling unit resolution on the estimation of spatial autocorrelation. Écoscience 6, 636-641. https://doi.org/10.1080/11956860.1999.11682547
 
Getis, A., 2010. Spatial Autocorrelation, in: Fischer, M.M., Getis, A. (Eds.), Handbook of Applied Spatial Analysis: Software Tools, Methods and Applications. Springer Berlin Heidelberg, Berlin, Heidelberg, pp. 255-278.
 
Laroche, F., 2023. Efficient sampling designs to assess biodiversity spatial autocorrelation: should we go fractal? bioRxiv, 2022.07.29.501974, ver. 4 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.07.29.501974
 
Legendre, P., 1993. Spatial Autocorrelation: Trouble or New Paradigm? Ecology 74, 1659-1673. https://doi.org/10.2307/1939924
 
Legendre, P., Dale, M.R.T., Fortin, M.-J., Gurevitch, J., Hohn, M., Myers, D., 2002. The consequences of spatial structure for the design and analysis of ecological field surveys. Ecography 25, 601-615. https://doi.org/10.1034/j.1600-0587.2002.250508.x
 
Legendre, P., Fortin, M.J., 1989. Spatial pattern and ecological analysis. Vegetatio 80, 107-138. https://doi.org/10.1007/BF00048036
 
Legendre, P., Legendre, L., 2012. Numerical Ecology, Third Edition ed. Elsevier, The Netherlands.
 
McDonald, T., 2012. Spatial sampling designs for long-term ecological monitoring, in: Cooper, A.B., Gitzen, R.A., Licht, D.S., Millspaugh, J.J. (Eds.), Design and Analysis of Long-term Ecological Monitoring Studies. Cambridge University Press, Cambridge, pp. 101-125.
 
McGill, B.J., 2010. Matters of Scale. Science 328, 575-576. https://doi.org/10.1126/science.1188528
 
McGill, B.J., 2011. Linking biodiversity patterns by autocorrelated random sampling. American Journal of Botany 98, 481-502. https://doi.org/10.3732/ajb.1000509
 
Rahbek, C., 2005. The role of spatial scale and the perception of large-scale species-richness patterns. Ecology Letters 8, 224-239. https://doi.org/10.1111/j.1461-0248.2004.00701.x
 
Steel, E.A., Kennedy, M.C., Cunningham, P.G., Stanovick, J.S., 2013. Applied statistics in ecology: common pitfalls and simple solutions. Ecosphere 4, art115. https://doi.org/10.1890/ES13-00160.1
 
Tobler, W.R., 1970. A Computer Movie Simulating Urban Growth in the Detroit Region. Economic Geography 46, 234-240. https://doi.org/10.2307/143141
 
Wang, S., Lamy, T., Hallett, L.M., Loreau, M., 2019. Stability and synchrony across ecological hierarchies in heterogeneous metacommunities: linking theory to data. Ecography 42, 1200-1211. https://doi.org/10.1111/ecog.04290
 
Wiens, J.A., 1989. The ecology of bird communities. Cambridge University Press.
avatar

MARSH Charles JORCID_LOGO

  • -, -, -, United Kingdom
  • Community ecology, Spatial ecology, Metacommunities & Metapopulations, Species distributions, Statistical ecology, Tropical ecology

Recommendations:  0

Review:  1

Areas of expertise
Spatial ecology, fragmentation, beta-diversity, species distributions, spatial scale