RÄDECKER Nils's profile
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RÄDECKER NilsORCID_LOGO

  • ENAC, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
  • Biodiversity, Eco-evolutionary dynamics, Eco-immunology & Immunity, Marine ecology, Microbial ecology & microbiology, Molecular ecology, Symbiosis
  • recommender

Recommendation:  1

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Areas of expertise
I am a trained aquatic ecologist with a special interest in microbial nutrient cycling and symbiosis. In my work, I use cnidarians as simple model systems to study the role of metabolic interactions in the maintenance and breakdown of photosymbioses. Thereby, I hope to identify some of the fundamental processes leading to the establishment of endosymbioses and, thus, the evolution of eukaryotic life itself.

Recommendation:  1

11 Oct 2023
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Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis

Disentangling microbial exopolymer dynamics in intertidal sediments

Recommended by and based on reviews by 2 anonymous reviewers

The secretion of extracellular polymeric substances (EPS) enables microorganisms to shape and interact with their environment [1]. EPS support cell adhesion and motility, offer protection from unfavorable conditions, and facilitate nutrient acquisition and transfer between microorganisms [2]. EPS production and consumption thus control the formation and structural organization of biofilms [3]. However, in marine environments, our understanding of the sources and composition of EPS is limited.
 
In this study, Hubas et al. [4] compare the carbon and nitrogen isotope ratios in EPS with the carbon isotope ratios of fatty acid biomarkers to identify the main EPS producers in intertidal sediments. The authors find pronounced differences in the diversity, composition, isotope signatures, and production/consumption dynamics of EPS between muddy and sandy environments. While the contribution of diatoms was highest in the bound fraction of EPS in muddy environments, diatom contribution was highest in the colloidal fraction of EPS in sandy environments. These differences between sites likely reflect the functional differences in EPS dynamics of epipelic and episammic sediment communities.
 
Taken together, the innovative approach of the authors provides insights into the diversity and origin of EPS in microphytobenthic communities and highlights the importance of different microbial groups in EPS production. These findings are vital for understanding EPS dynamics in microbial interactions and their role in the functioning of coastal ecosystems.

References

  1. Flemming, H.-C. (2016) EPS-then and now. Microorganisms 4, 41 https://doi.org/10.3390/microorganisms4040041
  2. Wolfaardt, G.M. et al. (1999) Function of EPS. In Microbial Extracellular Polymeric Substances, pp. 171–200, Springer Berlin Heidelberg https://doi.org/10.1007/978-3-642-60147-7
  3. Flemming, H.-C. et al. (2007) The EPS matrix: the “house of biofilm cells.” J. Bacteriol. 189, 7945–7947 https://doi.org/10.1128/jb.00858-07
  4. Hubas, C. et al. (2022) Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis. bioRxiv, ver. 2 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.12.02.516908
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RÄDECKER NilsORCID_LOGO

  • ENAC, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
  • Biodiversity, Eco-evolutionary dynamics, Eco-immunology & Immunity, Marine ecology, Microbial ecology & microbiology, Molecular ecology, Symbiosis
  • recommender

Recommendation:  1

Reviews:  0

Areas of expertise
I am a trained aquatic ecologist with a special interest in microbial nutrient cycling and symbiosis. In my work, I use cnidarians as simple model systems to study the role of metabolic interactions in the maintenance and breakdown of photosymbioses. Thereby, I hope to identify some of the fundamental processes leading to the establishment of endosymbioses and, thus, the evolution of eukaryotic life itself.