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07 Feb 2025
![]() In defense of the original Type I functional response: The frequency and population-dynamic effects of feeding on multiple prey at a timeMark Novak, Kyle Edward Coblentz, John P DeLong https://doi.org/10.1101/2024.05.14.594210Revising behavioural assumptions leads to a new appreciation of an old functional response modelRecommended by Frédéric BarraquandThe functional response, describing the relation between predator intake rate and prey density, is a pivotal concept to understand foraging behaviour and its consequences for community dynamics. Holling (1959a) introduced three types of functional responses according to their shapes, labelled I, II and III. The type II, also known as the disc equation (Holling 1959b), has become popular among empiricists and theoreticians alike, due to its ability to describe predator intake saturation. The type III is often used to represent predator switching to other prey species when main prey density is low. Although theoretical works identify the linear functional response used in Lotka-Volterra models as a type I, Holling (1959a)’s type I model actually envisioned that at some threshold prey density, the linear increase in predator intake with prey density would give way to an upper predator intake limit, so that Holling’s type I has a rectilinear shape, with an angle joining straight lines. Ecology students can actually see this rectilinear shape reproduced in some texbooks, although not in textbook dynamical models, as they usually transition from Lotka-Volterra models to models with type II response. To many, the rectilinear shape of the original type I looks like a historical curiosity: the type II functional response accounts for intake rate saturation with a more convenient smooth function. Novak et al. (2025) turn this preconception on its head by first pedagogically showing that Holling’s original type I model can be obtained as a limit case of a variant of the celebrated type II model. The derivation follows up earlier work by Sjöberg (1980), which might be unfamiliar to readers outside aquatic ecology. The often untold assumption of the type II functional response model is that searching and handling prey are two exclusive behavioural processes, with predators that can only handle one prey item at a time. Allowing for several prey items to be handled at once while searching, until the predator reaches n prey items, the original type I functional response emerges as a limit case of the « multiprey » functional response as n goes to infinity. Interestingly, the multiprey response looks a lot like the original type I for large yet doable n. Novak et al. (2025) then proceed to look for the prevalence of such multiprey functional response shapes in a large database of functional responses (Uiterwaal et al. 2022). Combining linear type I and multiprey models (the asymptote may not always be visible), they find support for this revised type I hypothesis in about one-third of the cases. Although the type II and III models are still well supported by data, the results do suggest that linearity at low prey density may well be more frequent than one thinks. They complement this analysis by showing that larger predators relative to their prey tend to have larger n in the multiprey response. It is consistent with the hypothesis that the bigger you are relative to your prey, the more prey items you can handle at once. Finally, Novak et al. (2025) investigate the consequences of the multiprey model for community dynamics. They find overall a richer dynamical behaviour than the Lotka-Volterra type I and common parameterizations of the type II, suggesting that observed linearity in some range of prey density does not necessarily translate in simpler dynamical behaviour. Novak et al. (2025) provide here a convincing and pedagogical study showing how seemingly benign behavioural assumptions can in fact profoundly alter the perceived relevance of community dynamics models. As they conclude, their analyses have lessons for future empirical functional response work, which should not necessarily dismiss the type I model and consider perhaps variants to the classical type II and III, as well as for future theoretical analyses, which could generalize this model to multiple prey species, or relax other behavioural assumptions. References Holling, C. S. (1959a). The components of predation as revealed by a study of small-mammal predation of the European Pine Sawfly. The Canadian Entomologist, 91(5), 293-320. https://doi.org/10.4039/Ent91293-5 Holling, C. S. (1959b). Some characteristics of simple types of predation and parasitism. The Canadian Entomologist, 91(7), 385-398. https://doi.org/10.4039/Ent91385-7 Novak, M., Coblentz, K. E., & DeLong, J. P (2025). In defense of the original Type I functional response: The frequency and population-dynamic effects of feeding on multiple prey at a time. bioRxiv, ver.4 peer-reviewed and recommended by PCI Ecology https://doi.org/10.1101/2024.05.14.594210 Sjöberg, S. (1980). Zooplankton feeding and queueing theory. Ecological Modelling, 10(3-4), 215-225. https://doi.org/10.1016/0304-3800(80)90060-5 Uiterwaal, S. F., Lagerstrom, I. T., Lyon, S. R., & DeLong, J. P. (2022). FoRAGE database: A compilation of functional responses for consumers and parasitoids. Ecology, 103(7), e3706. https://doi.org/10.1002/ecy.3706 | In defense of the original Type I functional response: The frequency and population-dynamic effects of feeding on multiple prey at a time | Mark Novak, Kyle Edward Coblentz, John P DeLong | <p>Ecologists differ in the degree to which they consider the linear Type I functional response to be an unrealistic versus sufficient representation of predator feeding rates. Empiricists tend to consider it unsuitably non-mechanistic and theoret... | ![]() | Coexistence, Community ecology, Food webs, Foraging, Population ecology, Theoretical ecology | Frédéric Barraquand | 2024-05-21 03:44:00 | View | |
30 Oct 2024
![]() The importance of sampling design for unbiased estimation of survival using joint live-recapture and live resight modelsMaria C. Dzul, Charles B. Yackulic, William L. Kendall https://doi.org/10.48550/arXiv.2312.13414In the quest for estimating true survivalRecommended by Matthieu PaquetAccurately estimating survival rate and identifying the drivers of its variation is essential for our understanding of population dynamics and life history strategies (Sæther and Bakke 2000), as well as for population management and conservation (Francis et al. 1998, Doherty et al. 2014). Many studies estimate survival from capture–recapture data using the Cormack–Jolly–Seber (CJS) model (Lebreton et al. 1992). However, survival estimates are confounded with permanent emigration from the study area, which can be particularly problematic for mobile species. This is problematic, not only because CJS models under estimate true survival in populations where permanent emigration occurs (i.e. they estimate “apparent” survival), but also because some factors of interest may affect both survival and emigration (e.g., habitat quality, Paquet et al. 2020), leaving the interpretation of results challenging, for example in terms of management decisions. Several methods have been developed to account for permanent emigration when estimating survival, for example by jointly analyzing CMR data with data on individuals’ locations at each capture/resighting site (to estimate their dispersal distances; Schaub and Royle 2013, Badia Boher et al. 2023), with telemetry data (Powel et al. 2000), mark recovery data (Burnham 1993, Fay et al. 2019), or with live-resight data (Barker 1997). The Barker joint live-recapture/live-resight (JLRLR) model can estimate survival when resight data are continuous over a long interval and from a larger area than the capture recapture data. This model becomes particularly promising with the growing collection of data from citizen science, or remote detection tools (Dzul et al. 2023). However, as pointed out by Dzul et al., this model assumes that resight probability is homogeneous across the area where individuals can move, and this assumption is likely violated for example because of non-random movements or because of non-random location of resighting sites. In their manuscript, Dzul et al. performed a thorough simulation study to evaluate the accuracy of survival estimates from JLRLR models under various study designs regarding the location of resight sites (global, random, fixed including the capture site, and fixed excluding the capture site). They simulated data with varying survival and movement values, varying recapture and resight probabilities, and varying sample sizes. Finally, they also developed and fitted a multi state version of the JLRLR model. They show that JLRLR models performed better than CJS models. Survival estimates were still often biased (either positively or negatively) but they were less biased when sesight sites were randomly located (rather than at fixed locations), when recapture sites were included in the resighting design, and when using the multi state JLRLR model they developed. This study highlights (multistate) JLRLR models as an alternative to CJS models one should consider when auxiliary resight data can be collected. Moreover, it shows the importance of evaluating not only model performance, but also the efficiency of alternative sampling designs before choosing one for our studies. Hopefully, this study will help the authors and other researchers making a more informed and efficient choice of model and design to estimate survival in their study populations. References Jaume A. Badia-Boher, Joan Real, Joan Lluís Riera, Frederic Bartumeus, Francesc Parés, Josep Maria Bas, and Antonio Hernández-Matías. Joint estimation of survival and dispersal effectively corrects the permanent emigration bias in mark-recapture analyses. (2023) Scientific reports 13, no. 1: 6970. https://doi.org/10.1038/s41598-023-32866-0 Richard J Barker (1997) Joint modeling of live-recapture, tag-resight, and tag-recovery data. Biometrics: 666-677. https://doi.org/10.2307/2533966 Kenneth P. Burnham (1993) Marked Individuals in the Study of Bird Populations (ed. J.D. Lebreton), pp. 199–213. Birkhäuser, Basel Kevin E. Doherty, David E. Naugle, Jason D. Tack, Brett L. Walker, Jon M. Graham, Jeffrey L. Beck (2014) Linking conservation actions to demography: grass height explains variation in greater sage‐grouse nest survival. Wildlife biology 20, no. 6 : 320-325. https://doi.org/10.2981/wlb.00004 Maria C. Dzul, Charles B. Yackulic, William L. Kendall (2023) The importance of sampling design for unbiased estimation of survival using joint live-recapture and live resight models. arXiv, ver.3 peer-reviewed and recommended by PCI Ecology https://doi.org/10.48550/arXiv.2312.13414 Rémi Fay, Stephanie Michler, Jacques Laesser, and Michael Schaub (2019) Integrated population model reveals that kestrels breeding in nest boxes operate as a source population. Ecography 42, no. 12: 2122-2131. https://doi.org/10.1111/ecog.04559 Charles M. Francis, John R. Sauer, Jerome R. Serie (1998) Effect of restrictive harvest regulations on survival and recovery rates of American black ducks. The Journal of Wildlife Management : 1544-1557. https://doi.org/10.2307/3802021 Jean-Dominique Lebreton, Kenneth P. Burnham, Jean Clobert, David R. Anderson (1992) Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies. Ecological monographs 62.1: 67-118. https://doi.org/10.2307/2937171 Matthieu Paquet, Debora Arlt, Jonas Knape, Matthew Low, Pär Forslund, and Tomas Pärt (2020) Why we should care about movements: Using spatially explicit integrated population models to assess habitat source–sink dynamics. Journal of Animal Ecology 89, no. 12: 2922-2933. https://doi.org/10.1111/1365-2656.13357 Larkin A. Powell, Michael J. Conroy, James E. Hines, James D. Nichols, and David G. Krementz. Simultaneous use of mark-recapture and radiotelemetry to estimate survival, movement, and capture rates. (2000) The Journal of Wildlife Management : 302-313. https://doi.org/10.2307/3803003 Bernt-Erik Sæther, Øyvind Bakke (2000) Avian life history variation and contribution of demographic traits to the population growth rate. Ecology 81.3 : 642-653. https://doi.org/10.1890/0012-9658(2000)081[0642:ALHVAC]2.0.CO;2 Michael Schaub, J. Andrew Royle. Estimating true instead of apparent survival using spatial Cormack–Jolly–Seber models (2014) Methods in Ecology and Evolution 5, no. 12: 1316-1326. https://doi.org/10.1111/2041-210X.12134 | The importance of sampling design for unbiased estimation of survival using joint live-recapture and live resight models | Maria C. Dzul, Charles B. Yackulic, William L. Kendall | <p>Survival is a key life history parameter that can inform management decisions and life history research. Because true survival is often confounded with permanent and temporary emigration from the study area, many studies must estimate apparent ... | ![]() | Dispersal & Migration, Euring Conference, Population ecology, Statistical ecology | Matthieu Paquet | 2023-12-22 22:31:07 | View | |
25 Nov 2022
![]() Positive fitness effects help explain the broad range of Wolbachia prevalences in natural populationsPetteri Karisto, Anne Duplouy, Charlotte de Vries, Hanna Kokko https://doi.org/10.1101/2022.04.11.487824Population dynamics of Wolbachia symbionts playing Dr. Jekyll and Mr. HydeRecommended by Jorge Peña based on reviews by 3 anonymous reviewers"Good and evil are so close as to be chained together in the soul" Maternally inherited symbionts—microorganisms that pass from a female host to her progeny—have two main ways of increasing their own fitness. First, they can increase the fecundity or viability of infected females. This “positive fitness effects” strategy is the one commonly used by mutualistic symbionts, such as Buchnera aphidicola—the bacterial endosymbiont of the pea aphid, Acyrthosiphon pisum [4]. Second, maternally inherited symbionts can manipulate the reproduction of infected females in a way that enhances symbiont transmission at the expense of host fitness. A famous example of this “reproductive parasitism” strategy is the cytoplasmic incompatibility (CI) [3] induced by bacteria of the genus Wolbachia in their arthropod and nematode hosts. CI works as a toxin-antidote system, whereby the sperm of infected males is modified in a lethal way (toxin) that can only be reverted if the egg is also infected (antidote) [1]. As a result, CI imposes a kind of conditional sterility on their hosts: while infected females are compatible with both infected and uninfected males, uninfected females experience high offspring mortality if (and only if) they mate with infected males [7]. These two symbiont strategies (positive fitness effects versus reproductive parasitism) have been traditionally studied separately, both empirically and theoretically. However, it has become clear that the two strategies are not mutually exclusive, and that a reproductive parasite can simultaneously act as a mutualist—an infection type that has been dubbed “Jekyll and Hyde” [6], after the famous novella by Robert Louis Stevenson about kind scientist Dr. Jekyll and his evil alter ego, Mr. Hyde. In important previous work, Zug and Hammerstein [7] analyzed the consequences of positive fitness effects on the dynamics of different kind of infections, including “Jekyll and Hyde” infections characterized by CI and other reproductive parasitism strategies. Building on this and related modeling framework, Karisto et al. [2] re-investigate and expand on the interplay between positive fitness effects and reproductive parasitism in Wolbachia infections by focusing on CI in both diplodiploid and haplodiploid populations, and by paying particular attention to the mathematical assumption structure underlying their results. Karisto et al. begin by reviewing classic models of Wolbachia infections in diplodiploid populations that assume a “negative fitness effect” (modeled as a fertility penalty on infected females), characteristic of a pure strategy of reproductive parasitism. Together with the positive frequency-dependent effects due to CI (whereby the fitness benefits to symbionts infecting females increase with the proportion of infected males in the population) this results in population dynamics characterized by two stable equilibria (the Wolbachia-free state and an interior equilibrium with a high frequency of Wolbachia-carrying hosts) separated by an unstable interior equilibrium. Wolbachia can then spread once the initial frequency is above a threshold or an invasion barrier, but is prevented from fixing by a proportion of infections failing to be passed on to offspring. Karisto et al. show that, given the assumption of negative fitness effects, the stable interior equilibrium can never feature a Wolbachia prevalence below one-half. Moreover, they convincingly argue that a prevalence greater than but close to one-half is difficult to maintain in the presence of stochastic fluctuations, as in these cases the high-prevalence stable equilibrium would be too close to the unstable equilibrium signposting the invasion barrier. Karisto et al. then relax the assumption of negative fitness effects and allow for positive fitness effects (modeled as a fertility premium on infected females) in a diplodiploid population. They show that positive fitness effects may result in situations where the original invasion threshold is now absent, the bistable coexistence dynamics are transformed into purely co-existence dynamics, and Wolbachia symbionts can now invade when rare. Karisto et al. conclude that positive fitness effects provide a plausible and potentially testable explanation for the low frequencies of symbiont-carrying hosts that are sometimes observed in nature, which are difficult to reconcile with the assumption of negative fitness effects. Finally, Karisto et al. extend their analysis to haplodiploid host populations (where all fertilized eggs develop as females). Here, they investigate two types of cytoplasmic incompatibility: a female-killing effect, similar to the CI effect studied in diplodiploid populations (the “Leptopilina type” of Vavre et al. [5]) and a masculinization effect, where CI leads to the loss of paternal chromosomes and to the development of the offspring as a male (the “Nasonia type” of Vavre et al. [5]). The models are now two-sex, which precludes a complete analytical treatment, in particular regarding the stability of fixed points. Karisto et al. compensate by conducting large numerical analyses that support their claims. Importantly, all main conclusions regarding the interplay between positive fitness effects and reproductive parasitism continue to hold under haplodiploidy. All in all, the analysis and results by Karisto et al. suggest that it is not necessary to resort to classical (but depending on the situation, unlikely) mechanisms, such as ongoing invasion or source-sink dynamics, to explain arthropod populations featuring low-prevalent Wolbachia infections. Instead, low-frequency equilibria might be simply due to reproductive parasites conferring beneficial fitness effects, or Wolbachia symbionts playing Dr. Jekyll (positive fitness effects) and Mr. Hyde (cytoplasmatic incompatibility). References [1] Beckmann JF, Bonneau M, Chen H, Hochstrasser M, Poinsot D, Merçot H, Weill M, Sicard M, Charlat S (2019) The Toxin–Antidote Model of Cytoplasmic Incompatibility: Genetics and Evolutionary Implications. Trends in Genetics, 35, 175–185. https://doi.org/10.1016/j.tig.2018.12.004 [2] Karisto P, Duplouy A, Vries C de, Kokko H (2022) Positive fitness effects help explain the broad range of Wolbachia prevalences in natural populations. bioRxiv, 2022.04.11.487824, ver. 5 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.04.11.487824 [3] Laven H (1956) Cytoplasmic Inheritance in Culex. Nature, 177, 141–142. https://doi.org/10.1038/177141a0 [4] Perreau J, Zhang B, Maeda GP, Kirkpatrick M, Moran NA (2021) Strong within-host selection in a maternally inherited obligate symbiont: Buchnera and aphids. Proceedings of the National Academy of Sciences, 118, e2102467118. https://doi.org/10.1073/pnas.2102467118 [5] Vavre F, Fleury F, Varaldi J, Fouillet P, Bouletreau M (2000) Evidence for Female Mortality in Wolbachia-Mediated Cytoplasmic Incompatibility in Haplodiploid Insects: Epidemiologic and Evolutionary Consequences. Evolution, 54, 191–200. https://doi.org/10.1111/j.0014-3820.2000.tb00019.x [6] Zug R, Hammerstein P (2015) Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hosts. Biological Reviews, 90, 89–111. https://doi.org/10.1111/brv.12098 [7] Zug R, Hammerstein P (2018) Evolution of reproductive parasites with direct fitness benefits. Heredity, 120, 266–281. https://doi.org/10.1038/s41437-017-0022-5 | Positive fitness effects help explain the broad range of Wolbachia prevalences in natural populations | Petteri Karisto, Anne Duplouy, Charlotte de Vries, Hanna Kokko | <p style="text-align: justify;">The bacterial endosymbiont <em>Wolbachia</em> is best known for its ability to modify its host’s reproduction by inducing cytoplasmic incompatibility (CI) to facilitate its own spread. Classical models predict eithe... | ![]() | Host-parasite interactions, Population ecology | Jorge Peña | 2022-04-12 12:52:55 | View | |
10 Oct 2024
![]() Large-scale spatio-temporal variation in vital rates and population dynamics of an alpine birdChloé R. Nater, Francesco Frassinelli, James A. Martin, Erlend B. Nilsen https://doi.org/10.32942/X2VP6JDo look up: building a comprehensive view of population dynamics from small scale observation through citizen scienceRecommended by Aidan Jonathan Mark Hewison based on reviews by Todd Arnold and 1 anonymous reviewerPopulation ecologists are in the business of decrypting the drivers of variation in the abundance of organisms across space and time (Begon et al. 1986). Comprehensive studies of wild vertebrate populations which provide the necessary information on variations in vital rates in relation to environmental conditions to construct informative models of large-scale population dynamics are rare, ostensibly because of the huge effort required to monitor individuals across ecological contexts and over generations. In this current aim, Nater et al. (2024) are leading the way forward by combining distance sampling data collected through a large-scale citizen science (Fraisl et al. 2022) programme in Norway with state-of-the-art modelling approaches to build a comprehensive overview of the population dynamics of willow ptarmigan. Their work enhances our fundamental understanding of this system and provides evidence-based tools to improve its management (Williams et al. 2002). Even better, they are working for the common good, by providing an open-source workflow that should enable ecologists and managers together to predict what will happen to their favourite model organism when the planet throws its next curve ball. In the case of the ptarmigan, for example, it seems that the impact of climate change on their population dynamics will differ across the species’ distributional range, with a slower pace of life (sensu Stearns 1983) at higher latitudes and altitudes. On a personal note, I have often mused whether citizen science, with its inherent limits and biases, was just another sticking plaster over the ever-deeper cuts in the research budgets to finance long-term ecological research. Here, Nater et al. are doing well to convince me that we would be foolish to ignore such opportunities, particularly when citizens are engaged, motivated, with an inherent capacity for the necessary discipline to employ common protocols in a standardised fashion. A key challenge for us professional ecologists is to inculcate the next generation of citizens with a sense of their opportunity to contribute to a better understanding of the natural world. References Begon, Michael, John L Harper, and Colin R Townsend. 1986. Ecology: individuals, populations and communities. Blackwell Science. Fraisl, Dilek, Gerid Hager, Baptiste Bedessem, Margaret Gold, Pen-Yuan Hsing, Finn Danielsen, Colleen B Hitchcock, et al. 2022. Citizen Science in Environmental and Ecological Sciences. Nature Reviews Methods Primers 2 (1): 64. https://doi.org/10.1038/s43586-022-00144-4 Chloé R. Nater, Francesco Frassinelli, James A. Martin, Erlend B. Nilsen (2024) Large-scale spatio-temporal variation in vital rates and population dynamics of an alpine bird. EcoEvoRxiv, ver.4 peer-reviewed and recommended by PCI Ecology https://doi.org/10.32942/X2VP6J Stearns, S.C. 1983. The influence of size and phylogeny of covariation among life-history traits in the mammals. Oikos, 41, 173–187. https://doi.org/10.2307/3544261 Williams, Byron K, James D Nichols, and Michael J Conroy. 2002. Analysis and Management of Animal Populations. Academic Press. | Large-scale spatio-temporal variation in vital rates and population dynamics of an alpine bird | Chloé R. Nater, Francesco Frassinelli, James A. Martin, Erlend B. Nilsen | <p>Quantifying temporal and spatial variation in animal population size and demography is a central theme in ecological research and important for directing management and policy. However, this requires field sampling at large spatial extents and ... | ![]() | Biodiversity, Biogeography, Conservation biology, Demography, Euring Conference, Landscape ecology, Life history, Population ecology, Spatial ecology, Metacommunities & Metapopulations, Statistical ecology, Terrestrial ecology | Aidan Jonathan Mark Hewison | 2024-02-02 08:54:06 | View | |
05 Nov 2019
![]() Crown defoliation decreases reproduction and wood growth in a marginal European beech population.Sylvie Oddou-Muratorio, Cathleen Petit-Cailleux, Valentin Journé, Matthieu Lingrand, Jean-André Magdalou, Christophe Hurson, Joseph Garrigue, Hendrik Davi, Elodie Magnanou https://doi.org/10.1101/474874Defoliation induces a trade-off between reproduction and growth in a southern population of BeechRecommended by Georges Kunstler based on reviews by 3 anonymous reviewersIndividuals ability to withstand abiotic and biotic stresses is crucial to the maintenance of populations at climate edge of tree species distribution. We start to have a detailed understanding of tree growth response and to a lesser extent mortality response in these populations. In contrast, our understanding of the response of tree fecundity and recruitment remains limited because of the difficulty to monitor it at the individual tree level in the field. Tree recruitment limitation is, however, crucial for tree population dynamics [1-2]. References [1] Clark, J. S. et al. (1999). Interpreting recruitment limitation in forests. American Journal of Botany, 86(1), 1-16. doi: 10.2307/2656950 | Crown defoliation decreases reproduction and wood growth in a marginal European beech population. | Sylvie Oddou-Muratorio, Cathleen Petit-Cailleux, Valentin Journé, Matthieu Lingrand, Jean-André Magdalou, Christophe Hurson, Joseph Garrigue, Hendrik Davi, Elodie Magnanou | <p>1. Although droughts and heatwaves have been associated to increased crown defoliation, decreased growth and a higher risk of mortality in many forest tree species, their impact on tree reproduction and forest regeneration still remains underst... | ![]() | Climate change, Eco-evolutionary dynamics, Molecular ecology, Physiology, Population ecology | Georges Kunstler | 2018-11-20 13:29:42 | View | |
01 Mar 2019
![]() Parasite intensity is driven by temperature in a wild birdAdèle Mennerat, Anne Charmantier, Sylvie Hurtrez-Boussès, Philippe Perret, Marcel M Lambrechts https://doi.org/10.1101/323311The global change of species interactionsRecommended by Jan Hrcek based on reviews by 2 anonymous reviewersWhat kinds of studies are most needed to understand the effects of global change on nature? Two deficiencies stand out: lack of long-term studies [1] and lack of data on species interactions [2]. The paper by Mennerat and colleagues [3] is particularly valuable because it addresses both of these shortcomings. The first one is obvious. Our understanding of the impact of climate on biota improves with longer times series of observations. Mennerat et al. [3] analysed an impressive 18-year series from multiple sites to search for trends in parasitism rates across a range of temperatures. The second deficiency (lack of species interaction data) is perhaps not yet fully appreciated, despite studies pointing this out ten years ago [2,4]. The focus is often on species range limits and how taking species interactions into account changes species range predictions based on climate alone (climate envelope models; [5]). But range limits are not everything, as the function of a species (or community, network, etc.) ultimately depends on the strengths of species interactions and not only on the presence or absence of a given species [2,4]. Mennerat et al. [3] show that in the case of birds and their nest parasites, it is the strength of the interaction that has changed, while the species involved stayed the same. Mennerat et al. [3] found nest parasitism to increase with temperature at the nestling stage. They have also searched for trends of parasitism dynamics dependence on the host, but did not find any, probably because the nest parasites are generalists and attack other bird species within the study sites. This study thus draws attention to wider networks of interacting species, and we urgently need more data to predict how interaction networks will rewire with progressing environmental change [6,7]. References [1] Lindenmayer, D.B., Likens, G.E., Andersen, A., Bowman, D., Bull, C.M., Burns, E., et al. (2012). Value of long-term ecological studies. Austral Ecology, 37(7), 745–57. doi: 10.1111/j.1442-9993.2011.02351.x | Parasite intensity is driven by temperature in a wild bird | Adèle Mennerat, Anne Charmantier, Sylvie Hurtrez-Boussès, Philippe Perret, Marcel M Lambrechts | <p>Increasing awareness that parasitism is an essential component of nearly all aspects of ecosystem functioning, as well as a driver of biodiversity, has led to rising interest in the consequences of climate change in terms of parasitism and dise... | ![]() | Climate change, Evolutionary ecology, Host-parasite interactions, Parasitology, Zoology | Jan Hrcek | 2018-05-17 14:37:14 | View | |
20 Sep 2024
![]() Body mass change over winter is consistently sex-specific across roe deer (Capreolus capreolus) populationsMark Hewison, Nadège Bonnot, Jean-Michel Gaillard, Petter Kjellander, Jean-François Lemaitre, Nicolas Morellet & Maryline Pellerin https://doi.org/10.1101/2022.09.09.507329Is it sexual mass dimorphism season?Recommended by Denis Réale based on reviews by Patrick Bergeron, Philip McLoughlin and Achaz von HardenbergPolygyny is assumed to have led to the evolution of strong sexual size dimorphism (SSD) in mammals, males often being heavier or showing more developed armaments than females (Weckerly 1998; Loison et al. 1999; Pérez‐Barbería et al. 2002). SSD generally increases with the degree of polygyny of the species. However, the degree of SSD, and particularly of sexual mass dimorphism, is not fixed for each species, and differences exist between populations (Blanckenhorn et al. 2006; Cox & Calsbeek 2010) or even between seasons within populations (Rughetti & Festa‐Bianchet 2011). In this study, Hewison et al. propose that studying seasonal variation in sexual mass dimorphism and how this can be affected by winter harshness and latitude allows us to better assess the energetic costs associated with the eco-evolutionary constraints acting on each sex. To achieve their goal, Hewison et al. use a formidable, long-term dataset of over 7,000 individuals, in five roe deer populations (Capreolus capreolus), from south-west France and Sweden. According to the authors, sexual mass dimorphism should be at its lowest in early spring in this species due to a stronger trade-off between antler growth and body weight maintenance in males over winter than in females. Furthermore, harsher conditions, varying both in time and space (i.e., Sweden vs. France), should increase winter weight loss, and thus, mass change differences between the sexes should be stronger and show more variation in Sweden than in France.
References Blanckenhorn, W. U., Stillwell, R. C., Young, K. A., Fox, C. W., & Ashton, K. G. (2006). When Rensch meets Bergmann: does sexual size dimorphism change systematically with latitude? Evolution, 60(10), 2004-2011. https://doi.org/10.1554/06-110.1 | Body mass change over winter is consistently sex-specific across roe deer (*Capreolus capreolus*) populations | Mark Hewison, Nadège Bonnot, Jean-Michel Gaillard, Petter Kjellander, Jean-François Lemaitre, Nicolas Morellet & Maryline Pellerin | <p>In most polygynous vertebrates, males must allocate energy to growing secondary sexual characteristics, such as ornaments or weapons, that they require to attract and defend potential mates, impacting body condition and potentially entailing fi... | ![]() | Behaviour & Ethology, Life history | Denis Réale | 2022-09-16 15:41:53 | View | |
31 May 2022
![]() Sexual coercion in a natural mandrill populationNikolaos Smit, Alice Baniel, Berta Roura-Torres, Paul Amblard-Rambert, Marie J. E. Charpentier, Elise Huchard https://doi.org/10.1101/2022.02.07.479393Rare behaviours can have strong effects: evidence for sexual coercion in mandrillsRecommended by Matthieu PaquetSexual coercion can be defined as the use by a male of force, or threat of force, which increases the chances that a female will mate with him at a time when she is likely to be fertile, and/or decrease the chances that she will mate with other males, at some cost to the female (Smuts & Smuts 1993). It has been evidenced in a wide range of species and may play an important role in the evolution of sexual conflict and social systems. However, identifying sexual coercion in natural systems can be particularly challenging. Notably, while male behaviour may have immediate consequences on mating success (“harassment”), the mating benefits may be delayed in time (“intimidation”), and in such cases, evidencing coercion requires detailed temporal data at the individual level. Moreover, in some species male aggressive behaviours may be subtle or rare and hence hardly observed, yet still have important effects on female mating probability and fitness. Therefore, investigating the occurrence and consequences of sexual coercion in such species is particularly relevant but studying it in a statistically robust way is likely to require a considerable amount of time spent observing individuals. In this paper, Smit et al. (2022) test three clear predictions of the sexual coercion hypothesis in a natural population of Mandrills, where severe male aggression towards females is rare: (1) male aggression is more likely on sexually receptive females than on females in other reproductive states, (2) receptive females are more likely to be injured and (3) male aggression directed towards females is positively related to subsequent probability of copulation between those dyads. They also tested an alternative hypothesis, the “aggressive male phenotype” under which the correlation between male aggression towards females and subsequent mating could be statistically explained by male overall aggressivity. In agreement with the three predictions of the sexual coercion hypothesis, (1) male aggression was on average 5 times more likely, and (2) injuries twice as likely, to be observed on sexually receptive females than on females in other reproductive states and (3) copulation between males and sexually receptive females was twice more likely to be observed when aggression by this male was observed on the female before sexual receptivity. There was no support for the aggressive male hypothesis. The reviewers and I were highly positive about this study, notably regarding the way it is written and how the predictions are carefully and clearly stated, tested, interpreted, and discussed. This study is a good illustration of a case where some behaviours may not be common or obvious yet have strong effects and likely important consequences and thus be clearly worth studying. More generally, it shows once more the importance of detailed long-term studies at the individual level for our understanding of the ecology and evolution of wild populations. It is also a good illustration of the challenges faced, when comparing the likelihood of contrasting hypotheses means we need to alter sample sizes and/or the likelihood to observe at all some behaviours. For example, observing copulation within minutes after aggression (and therefore, showing statistical support for “harassment”) is inevitably less likely than observing copulations on the longer-term (and therefore showing statistical support for “intimidation”, when of course effort is put into recording such behavioural data on the long-term). Such challenges might partly explain some apparently intriguing results. For example, why are swollen females more aggressed by males if only aggression before the swollen period seems associated with more chances of mating? Here, the authors systematically provide effect sizes (and confidence intervals) and often describe the effects in an intuitive biological way (e.g., “Swollen females were, on average, about five times more likely to become injured”). This clearly helps the reader to not merely compare statistical significances but also the biological strengths of the estimated effects and the uncertainty around them. They also clearly acknowledge limits due to sample size when testing the harassment hypothesis, yet they provide precious information on the probability of observing mating (a rare behaviour) directly after aggression (already a rare behaviour!), that is, 3 times out of 38 aggressions observed between a male and a swollen female. Once again, this highlights how important it is to be able to pursue the enormous effort put so far into closely and continuously monitoring this wild population. Finally, this study raises exciting new questions, notably regarding to what extent females exhibit “counter-strategies” in response to sexual coercion, notably whether there is still scope for female mate choice under such conditions, and what are the fitness consequences of these dynamic conflicting sexual interactions. No doubt these questions will sooner than later be addressed by the authors, and I am looking forward to reading their upcoming work. References Smit N, Baniel A, Roura-Torres B, Amblard-Rambert P, Charpentier MJE, Huchard E (2022) Sexual coercion in a natural mandrill population. bioRxiv, 2022.02.07.479393, ver. 5 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.02.07.479393 Smuts BB, Smuts R w. (1993) Male Aggression and Sexual Coercion of Females in Nonhuman Primates and Other Mammals: Evidence and Theoretical Implications. In: Advances in the Study of Behavior (eds Slater PJB, Rosenblatt JS, Snowdon CT, Milinski M), pp. 1–63. Academic Press. https://doi.org/10.1016/S0065-3454(08)60404-0 | Sexual coercion in a natural mandrill population | Nikolaos Smit, Alice Baniel, Berta Roura-Torres, Paul Amblard-Rambert, Marie J. E. Charpentier, Elise Huchard | <p style="text-align: justify;">Increasing evidence indicates that sexual coercion is widespread. While some coercive strategies are conspicuous, such as forced copulation or sexual harassment, less is known about the ecology and evolution of inti... | ![]() | Behaviour & Ethology | Matthieu Paquet | 2022-02-11 09:32:49 | View | |
06 Mar 2020
![]() A community perspective on the concept of marine holobionts: current status, challenges, and future directionsSimon M. Dittami, Enrique Arboleda, Jean-Christophe Auguet, Arite Bigalke, Enora Briand, Paco Cárdenas, Ulisse Cardini, Johan Decelle, Aschwin Engelen, Damien Eveillard, Claire M.M. Gachon, Sarah Griffiths, Tilmann Harder, Ehsan Kayal, Elena Kazamia, Francois H. Lallier, Mónica Medina, Ezequiel M. Marzinelli, Teresa Morganti, Laura Núñez Pons, Soizic Pardo, José Pintado Valverde, Mahasweta Saha, Marc-André Selosse, Derek Skillings, Willem Stock, Shinichi Sunagawa, Eve Toulza, Alexey Vorobev, Cat... 10.5281/zenodo.3696771Marine holobiont in the high throughput sequencing eraRecommended by Sophie Arnaud-Haond and Corinne Vacher based on reviews by Sophie Arnaud-Haond and Aurélie TasiemskiThe concept of holobiont dates back to more than thirty years, it was primarily coined to hypothesize the importance of symbiotic associations to generate significant evolutionary novelties. Quickly adopted to describe the now well-studied system formed by zooxanthella associated corals, this concept expanded much further after the emergence of High-Throughput Sequencing and associated progresses in metabarcoding and metagenomics. References | A community perspective on the concept of marine holobionts: current status, challenges, and future directions | Simon M. Dittami, Enrique Arboleda, Jean-Christophe Auguet, Arite Bigalke, Enora Briand, Paco Cárdenas, Ulisse Cardini, Johan Decelle, Aschwin Engelen, Damien Eveillard, Claire M.M. Gachon, Sarah Griffiths, Tilmann Harder, Ehsan Kayal, Elena Kazam... | Host-microbe interactions play crucial roles in marine ecosystems. However, we still have very little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them, and their ecological consequences. T... | ![]() | Marine ecology, Microbial ecology & microbiology, Symbiosis | Sophie Arnaud-Haond | 2019-02-05 17:57:11 | View | |
24 May 2022
![]() Controversy over the decline of arthropods: a matter of temporal baseline?François Duchenne, Emmanuelle Porcher, Jean-Baptiste Mihoub, Grégoire Loïs, Colin Fontaine https://doi.org/10.1101/2022.02.09.479422Don't jump to conclusions on arthropod abundance dynamics without appropriate dataRecommended by Tim CoulsonHumans are dramatically modifying many aspects of our planet via increasing concentrations of carbon dioxide in the atmosphere, patterns of land-use change, and unsustainable exploitation of the planet’s resources. These changes impact the abundance of species of wild organisms, with winners and losers. Identifying how different species and groups of species are influenced by anthropogenic activity in different biomes, continents, and habitats, has become a pressing scientific question with many publications reporting analyses of disparate data on species population sizes. Many conclusions are based on the linear analysis of rather short time series of organismal abundances. Duchenne F, Porcher E, Mihoub J-B, Loïs G, Fontaine C (2022) Controversy over the decline of arthropods: a matter of temporal baseline? bioRxiv, 2022.02.09.479422, ver. 3 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.02.09.479422 | Controversy over the decline of arthropods: a matter of temporal baseline? | François Duchenne, Emmanuelle Porcher, Jean-Baptiste Mihoub, Grégoire Loïs, Colin Fontaine | <p style="text-align: justify;">Recently, a number of studies have reported somewhat contradictory patterns of temporal trends in arthropod abundance, from decline to increase. Arthropods often exhibit non-monotonous variation in abundance over ti... | ![]() | Conservation biology | Tim Coulson | 2022-02-11 15:44:44 | View |
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