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09 Apr 2025
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Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fish

Habitat complexity reduces cannibalism, enhancing population-level diversity and productivity in a freshwater fish

Recommended by ORCID_LOGO based on reviews by Thomas Guillemaud, Joacim Näslund and 2 anonymous reviewers

Habitat complexity is an important mediator of processes spanning levels of biological organization from organisms to ecosystems (Shumway et al. 2007, Soukup et al. 2022). This complexity, which can be biogenic (e.g., foundation species; Bracken et al. 2007, Ellison 2019) or abiotic (e.g., substrate rugosity; Kovalenko et al. 2012), shapes processes ranging from individual foraging behavior (Michel and Adams 2009) to species’ interactions to food-web structure and biogeochemical rates (Langellotto and Denno 2006, Larsen et al. 2021, Soukup et al. 2022). For example, in the presence of simulated aquatic vegetation, predatory diving beetle larvae shift from active foraging to sit-and-wait predation, reducing activity and prey encounter rates (Michel and Adams 2009).

 

In this contribution, Edeline et al. (2023) present a detailed perspective on the role of habitat complexity in shaping populations of a freshwater fish (medaka, Oryzias latipes, Adrianichthyidae), including survival, age-class diversity, population growth rate, and density-dependence in the stock-recruitment relationship associated with changes in carrying capacity. Importantly, changes in these population demographic attributes and rates were associated with the role of habitat complexity in mitigating cannibalism – consumption of juvenile O. latipes by conspecific adults. Whereas this is not unexpected – Langelotto and Denno (2006) showed that habitat complexity reduces cannibalism in wolf spiders – the careful work of Edeline et al. (2023) to link changes in habitat complexity to multiple population-level attributes provides a uniquely detailed description of the role of submerged aquatic vegetation in mediating population diversity (e.g., higher age-class diversity) and productivity (e.g., population growth rate).

 

In many ways, this work by Edeline et al. (2023) provides population-level parallels to perspectives on the role of habitat complexity in determining community-level diversity and productivity. Structurally complex habitats, such as those provided by foundation species (Bracken et al. 2007, Ellison 2019) and substrate heterogeneity (Fairchild et al. 2024), are associated with higher species diversity and abundance at the community level. Edeline et al. (2023) extend these perspectives to the population level, highlighting the importance of habitat complexity across levels of biological organization. Their work highlights within-population diversity and interactions, including cannibalism and competition, illustrating often-neglected aspects of food-web complexity (Polis and Strong 1996).

References

Matthew E. S. Bracken, Barry E. Bracken, Laura Rogers-Bennett (2007) Species diversity and foundation species: potential indicators of fisheries yields and marine ecosystem functioning. California Cooperative Oceanic Fisheries Investigations Reports 48: 82-91. https://calcofi.org/downloads/publications/calcofireports/v48/Vol_48_Bracken.pdf

Eric Edeline, Yoann Bennevault, David Rozen-Rechels (2023) Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fish. bioRxiv, ver.4 peer-reviewed and recommended by PCI Ecology https://www.biorxiv.org/content/10.1101/2023.07.18.549540v4

Aaron M. Ellison (2019) Foundation species, non-trophic interactions, and the value of being common. iScience 13: 254-68. https://doi.org/10.1016/j.isci.2019.02.020

Tom P. Fairchild, Bettina Walter, Joshua J. Mutter, John N. Griffin. (2024) Topographic heterogeneity triggers complementary cascades that enhance ecosystem multifunctionality. Ecology 105: e4434. https://doi.org/10.1002/ecy.4434

Katya E. Kovalenko, Sidinei M. Thomaz, Danielle M. Warfe (2012) Habitat complexity: approaches and future directions. Hydrobiologia 685: 1-17. https://doi.org/10.1007/s10750-011-0974-z

Gail A. Langellotto, Robert F. Denno. (2006) Refuge from cannibalism in complex-structured habitats: implications for the accumulation of invertebrate predators. Ecological Entomology 31: 575-81. https://doi.org/10.1111/j.1365-2311.2006.00816.x

Annegret Larsen, Joshua R. Larsen, Stuart N. Lane (2021) Dam builders and their works: beaver influences on the structure and Function of river corridor hydrology, geomorphology, biogeochemistry and ecosystems. Earth-Science Reviews 218: 103623. https://doi.org/10.1016/j.earscirev.2021.103623

Matt J. Michel, Melinda M. Adams. (2009) Differential effects of structural complexity on predator foraging behavior. Behavioral Ecology: 313-17. https://doi.org/10.1093/beheco/arp005

Gary A. Polis, Donald R. Strong (1996) Food web complexity and community dynamics. American Naturalist 147: 813-46. https://doi.org/10.1086/285880

Caroly A. Shumway, Hans A. Hofmann, Adam P. Dobberfuhl (2007) Quantifying habitat complexity in aquatic ecosystems. Freshwater Biology 52: 1065-76. https://doi.org/10.1111/j.1365-2427.2007.01754.x.

Pavel R. Soukup, Joacim Näslund, Johan Höjesjö, David S. Boukal (2022) From individuals to communities: habitat complexity affects all levels of organization in aquatic environments. Wiley Interdisciplinary Reviews: Water 9: e1575.  https://doi.org/10.1002/wat2.1575

Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fishEric Edeline, Yoann Bennevault, David Rozen-Rechels<p>Structurally-complex habitats harbour more taxonomically-diverse and more productive communities, a phenomenon generally ascribed to habitat complexity relaxing the strength of inter-specific predation and competition. Here, we extend this clas...Allometry, Experimental ecology, Population ecologyMatthew Bracken2023-12-11 15:36:32 View
30 Oct 2024
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General mechanisms for a top-down origin of the predator-prey power law

Rethinking Biomass Scaling in Predators-Preys ecosystems

Recommended by based on reviews by Samraat Pawar and 1 anonymous reviewer

The study titled “General mechanisms for a top-down origin of the predator-prey power law” provides a fresh perspective on the classic predator-prey biomass relationship often observed in ecological communities. Traditionally, predator-prey dynamics have been examined through a bottom-up lens, where prey biomass and energy availability dictate predator populations. However, this study, which instead explores the possibility of a top-down origin for predator-prey power laws, offers a new dimension to our understanding of ecosystem regulation and raises questions about how predator-driven interactions might influence biomass scaling laws independently of prey abundance.

Ecologists have long noted that ecosystems often exhibit sublinear scaling between predator and prey biomasses. This pattern implies that predator biomass does not increase proportionally with prey biomass but at a slower rate, leading to a power-law relationship. Traditional explanations, such as those discussed by Peters (1983) and McGill (2006), have linked this to bottom-up processes, suggesting that increases in prey availability support, but do not fully translate to, larger predator populations due to energy losses in the trophic cascade. However, these explanations assume prey abundance as the principal driver. This new work raises an intriguing question: could density-dependent predator interactions, such as competition and interference, be equally or more important in creating this observed power law?

The authors hypothesized that density-dependent predator interactions might independently control predator biomass, even when prey is abundant. To test this, they combined predator and prey biomass dynamics equation based on a modified Lotka-Volterra model with agent-based models (ABMs) on a spatial grid, simulating predator-prey populations under varying environmental gradients and density-dependent conditions. These models allowed them to incorporate predator-specific factors, such as intraspecific competition (predator self-regulation) and predation interference, offering a quantitative framework to observe whether these top-down dynamics could indeed explain the observed biomass scaling independently of prey population changes.

Their results show that density-dependent predator dynamics, particularly at high predator densities, can yield sublinear scaling in predator-prey biomass relationships. This aligns well with empirical data, such as African mammalian ecosystems where predators seem to self-regulate under high prey availability by competing amongst themselves rather than expanding in direct proportion to prey biomass. Such findings support a shift from bottom-up perspectives to a model where top-down processes drive population regulation and biomass scaling.

I think that the work by Mazzarisi and collaborators (2024) offers a thought-provoking twist on predator-prey dynamics and suggests that our traditional frameworks may benefit from a broader, more predator-centered focus.

References

1. Onofrio Mazzarisi, Matthieu Barbier, Matteo Smerlak (2024) General mechanisms for a top-down origin of the predator-prey power law. bioRxiv, ver.2 peer-reviewed and recommended by PCI Ecology https://doi.org/10.1101/2024.04.04.588057

2. Peters, R. H. (1986). The ecological implications of body size (Vol. 2). Cambridge university press.

3. McGill, B. J. (2006). “A renaissance in the study of abundance.” Science, 314(5801), 770-772. https://doi.org/10.1126/science.1134920

General mechanisms for a top-down origin of the predator-prey power lawOnofrio Mazzarisi, Matthieu Barbier, Matteo Smerlak<p style="text-align: justify;">The ratio of predator-to-prey biomass density is not constant along ecological gradients: denser ecosystems tend to have fewer predators per prey, following a scaling relation known as the ``predator-prey power law'...Allometry, Community ecology, Food webs, Macroecology, Theoretical ecologySamir Simon Suweis2024-04-06 21:04:59 View
27 Feb 2025
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Mineral fertilization reduces the drought resistance of soil multifunctionality in a mountain grassland system through plant-soil interactions

Complex interactions between fertilization, drought and plants impact soil functioning

Recommended by ORCID_LOGO based on reviews by 2 anonymous reviewers

The ingredients of this study are classic in soil ecology and in the study of belowground-aboveground interactions: the presence of plants, draught and mineral fertilization (for the experimental treatments) and microbial carbon, microbial nitrogen, microbial phosphorus, substrate-induced respiration, cumulative extracellular enzyme activity, nitrogen mineralization potential, nitrification potential, denitrification potential (as a result of the treatments). It is interesting and useful to have tested all the combinations of the three treatments and the height variables (also in the form of a soil multifunctionality index) in the same study and to have been able to express hypotheses on the underlying mechanisms of interaction.

 

A key result is that mineral fertilization can reduce the soil ability to withstand draughts in terms of soil multifunctionality. This effect would be due to the increase in plant growth associated with fertilization, which reduces the availability of soil resources. This subsequently affects microbial diversity and soil multifunctionality. This confirms that the interactions between plants and soil microorganisms are complex and relevant for understanding and predicting the impact of climate and fertilization on soil functioning and the sustainability of plant-soil systems.

 

Although the study is rather fundamental, it has been designed to be relevant to grassland management and points to very general mechanisms that are likely to be relevant to arable land management. It would therefore be useful to repeat this work for interactions between a crop and its soil. Finally, it would be crucial to test the impact of heavy fertilization in intensive cropping systems on the resistance and resilience of soil functions to climate variability and climate changes.

 

A slightly disturbing fact is that the underlying interactions are probably so complicated that it seems so far impossible to me to make predictions about the ranking of the height combinations of treatments on each soil variable. But this complexity is clearly inherent to ecology and, in particular, plant-soil interactions.

 

References

Gabin Piton, Arnaud Foulquier, Lionel Bernard, Aurelie Bonin, Thomas Pommier, Sandra Lavorel, Roberto Geremia, Jean Christophe Clement (2025) Mineral fertilization reduces the drought resistance of soil multifunctionality in a mountain grassland system through plant-soil interactions. bioRxiv, ver.2 peer-reviewed and recommended by PCI Ecology https://doi.org/10.1101/2024.09.19.613911

Mineral fertilization reduces the drought resistance of soil multifunctionality in a mountain grassland system through plant-soil interactionsGabin Piton, Arnaud Foulquier, Lionel Bernard, Aurelie Bonin, Thomas Pommier, Sandra Lavorel, Roberto Geremia, Jean Christophe Clement<p>Increasing droughts threaten soil microbial communities and the multiple functions they control in agricultural soils. These soils are often fertilized with mineral nutrients, but it remains unclear how this fertilization may alter the capacity...Agroecology, Climate change, Ecological stoichiometry, Ecosystem functioning, Experimental ecology, Microbial ecology & microbiology, Soil ecologySébastien Barot2024-09-19 18:55:06 View
07 Aug 2023
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Being a tree crop increases the odds of experiencing yield declines irrespective of pollinator dependence

The complexities of understanding why yield is declining

Recommended by ORCID_LOGO based on reviews by Nicolas Deguines and 1 anonymous reviewer

Despite the repeated mantra that "correlation does not imply causation", ecological studies not amenable to experimental settings often rely on correlational patterns to infer the causes of observed patterns. In this context, it's of paramount importance to build a plausible hypothesis and take into account potential confounding factors. The paper by Aizen and collaborators (2023) is a beautiful example of how properly unveil the complexities of an intriguing pattern: The decline in yield of some crops over the last few decades. This is an outstanding question to solve given the need to feed a growing population without destroying the environment, for example by increasing the area under cultivation. Previous studies suggested that pollinator-dependent crops were more susceptible to suffering yield declines than non-pollinator-dependent crops (Garibaldi et al 2011). Given the actual population declines of some pollinators, especially in agricultural areas, this correlative evidence was quite appealing to be interpreted as a causal effect. However, as elegantly shown by Aizen and colleagues in this paper, this first analysis did not account for other alternative explanations, such as the effect of climate change on other plant life-history traits correlated with pollinator dependence. Plant life-history traits do not vary independently. For example, trees are more likely to be pollinator-dependent than herbs (Lanuza et al 2023), which can be an important confounding factor in the analysis. With an elegant analysis and an impressive global dataset, this paper shows that the declining trend in the yield of some crops is most likely associated with their life form than with their dependence on pollinators. This does not imply that pollinators are not important for crop yield, but that the decline in their populations is not leaving a clear imprint in the global yield production trends once accounted for the technological and agronomic improvements. All in all, this paper makes a key contribution to food security by elucidating the factors beyond declining yield trends, and is a brave example of how science can self-correct itself as new knowledge emerges.   

References

Aizen, M.A., Gleiser, G., Kitzberger T. and Milla R. 2023. Being A Tree Crop Increases the Odds of Experiencing Yield Declines Irrespective of Pollinator Dependence. bioRxiv, 2023.04.27.538617, ver 2, peer-reviewed and recommended by PCI Ecology. https://doi.org/10.1101/2023.04.27.538617

Lanuza, J.B., Rader, R., Stavert, J., Kendall, L.K., Saunders, M.E. and Bartomeus, I. 2023. Covariation among reproductive traits in flowering plants shapes their interactions with pollinators. Functional Ecology 37: 2072-2084. https://doi.org/10.1111/1365-2435.14340

Garibaldi, L.A., Aizen, M.A., Klein, A.M., Cunningham, S.A. and Harder, L.D. 2011. Global growth and stability of agricultural yield decrease with pollinator dependence. Proceedings of the National Academy of Sciences, 108: 5909-5914. https://doi.org/10.1073/pnas.1012431108

Being a tree crop increases the odds of experiencing yield declines irrespective of pollinator dependenceMarcelo A. Aizen, Gabriela Gleiser, Thomas Kitzberger, and Rubén Milla<p>Crop yields, i.e., harvestable production per unit of cropland area, are in decline for a number of crops and regions, but the drivers of this process are poorly known. Global decreases in pollinator abundance and diversity have been proposed a...Agroecology, Climate change, Community ecology, Demography, Facilitation & Mutualism, Life history, Phenotypic plasticity, Pollination, Terrestrial ecologyIgnasi Bartomeus2023-05-02 18:54:44 View
20 Feb 2023
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Best organic farming deployment scenarios for pest control: a modeling approach

Towards model-guided organic farming expansion for crop pest management

Recommended by ORCID_LOGO based on reviews by Julia Astegiano, Lionel Hertzog and Sylvain Bart

Reduce the impact the intensification of human activities has on the environmental is the challenge the humanity faces today, a major challenge that could be compared to climbing Everest without an oxygen supply. Indeed, over-population, pollution, burning fossil fuels, and deforestation are all evils which have had hugely detrimental effects on the environment such as climate change, soil erosion, poor air quality, and scarcity of drinking water to name but a few. In response to the ever-growing consumer demand, agriculture has intensified massively along with a drastic increase in the use of chemicals to ensure an adequate food supply while controlling crop pests. In this context, to address the disastrous effects of the intensive usage of pesticides on both human health and biodiversity, organic farming (OF) revealed as a miracle remedy with multiple benefits. Delattre et al. (2023) present a powerful modelling approach to decipher the crossed effects of the landscape structure and the OF expansion scenario on the pest abundance, both in organic and conventional (CF) crop fields. To this end, the authors ingeniously combined a grid-based landscape model with a spatially explicit predator-pest model. Based on an extensive in silico simulation process, they explore a diversity of landscape structures differing in their amount of semi-natural habitats (SHN) and in their fragmentation, to finally propose a ranking of various expansion scenarios according to the pest control methods in organic farming as well as to the pest and predators’ dissemination capacities. In total, 9 landscape structures (3 proportions of SHN x 3 fragmentation levels) were crossed with 3 expansion scenarios (RD = a random distribution of OF and CF in the grid; IP = isolated CF are converted; GP = CF within aggregates are converted), 4 pest management practices, 3 initial densities and 36 biological parameter combinations driving the predator’ and pest’s population dynamics. This exhaustive exploration of possible combinations of landscape and farming practices highlighted the main drivers of the various OF expansion scenarios, such as increased spillover of predators in isolated OF/CF fields, increased pest management efficiency in large patches of CF and the importance of the distance between OF and CF. In the end, this study brings to light the crucial role that landscape planning plays when OF practices have limited efficiency on pests. It also provides convincing arguments to the fact that converting to organic isolated CF as a priority seems to be the most promising scenario to limit pest densities in CF crops while improving predator to pest ratios (considered as a proxy of conservation biological control) in OF ones without increasing pest densities. Once further completed with model calibration validation based on observed life history traits data for both predators and pests, this work should be very helpful in sustaining policy makers to convince farmers of engaging in organic farming.

REFERENCES

Delattre T, Memah M-M, Franck P, Valsesia P, Lavigne C (2023) Best organic farming deployment scenarios for pest control: a modeling approach. bioRxiv, 2022.05.31.494006, ver. 2 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.05.31.494006

Best organic farming deployment scenarios for pest control: a modeling approachThomas Delattre, Mohamed-Mahmoud Memah, Pierre Franck, Pierre Valsesia, Claire Lavigne<p style="text-align: justify;">Organic Farming (OF) has been expanding recently around the world in response to growing consumer demand and as a response to environmental concerns. Its share of agricultural landscapes is expected to increase in t...Agroecology, Biological control, Landscape ecologySandrine Charles2022-06-03 11:41:14 View
14 Jul 2023
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Field margins as substitute habitat for the conservation of birds in agricultural wetlands

Searching for conservation opportunities at the margins

Recommended by ORCID_LOGO based on reviews by Scott Wilson and Elena D Concepción

In a progressively human-dominated planet (Venter et al., 2016), the fate of many species will depend on the extent to which they can persist in anthropogenic landscapes. In Western Europe, where only small areas of primary habitat remain (e.g. Sabatini et al., 2018), semi-natural areas are crucial habitats to many native species, yet they are threatened by the expansion of human activities, including agricultural expansion and intensification (Rigal et al., 2023). 

A new study by Mallet and colleagues (Mallet et al., 2023) investigates the extent to which bird species in the Camargue region are able to use the margins of agricultural fields as substitutes for their preferred semi-natural habitats. Located in the delta of the Rhône River in Southern France, the Camargue is internationally recognized for its biodiversity value, classified as a Biosphere Reserve by UNESCO and as a Wetland of International Importance under the Ramsar Convention (IUCN & UN-WCMC, 2023). Mallet and colleagues tested three specific hypotheses: that grass strips (grassy field boundaries, including grassy tracks or dirt roads used for moving agricultural machinery) can function as substitute habitats for grassland species; that reed strips along drainage ditches (common in the rice paddy landscapes of the Camargue) can function as substitute habitats to wetland species; and that hedgerows can function as substitute habitats to species that favour woodland edges. They did so by measuring how the local abundances of 14 bird species (nine typical of forest edges, 3 of grasslands, and two of reedbeds) respond to increasing coverage of either the three types of field margins or of the three types of semi-natural habitat. 

This is an elegant study design, yet – as is often the case with real field data – results are not as simple as expected. Indeed, for most species (11 out of 14) local abundances did not increase significantly with the area of their supposed primary habitat, undermining the assumption that they are strongly associated with (or dependent on) those habitats. Among the three species that did respond positively to the area of their primary habitat, one (a forest edge species) responded positively but not significantly to the area of field margins (hedgerows), providing weak evidence to the habitat compensation hypothesis. For the other two (grassland and a wetland species), abundance responded even more strongly to the area of field margins (grass and reed strips, respectively) than to the primary habitat, suggesting that the field margins are not so much a substitute but valuable habitats in their own right. 

It would have been good conservation news if field margins were found to be suitable habitat substitutes to semi-natural habitats, or at least reasonable approximations, to most species. Given that these margins have functional roles in agricultural landscapes (marking boundaries, access areas, water drainage), they could constitute good win-win solutions for reconciling biodiversity conservation with agricultural production. Alas, the results are more complicated than that, with wide variation in species responses that could not have been predicted from presumed habitat affinities. These results illustrate the challenges of conservation practice in complex landscapes formed by mosaics of variable land use types. With species not necessarily falling neatly into habitat guilds, it becomes even more challenging to plan strategically how to manage landscapes to optimize their conservation. The results presented here suggest that species’ abundances may be responding to landscape variables not taken into account in the analyses, such as connectivity between habitat patches, or maybe positive and negative edge effects between land use types. That such uncertainties remain even in a well-studied region as the Camargue, and for such a well-studied taxon such as birds, only demonstrates the continued importance of rigorous field studies testing explicit hypotheses such as this one by Mallet and colleagues. 

References

IUCN, & UN-WCMC (2023). Protected Planet. Protected Planet. https://www.protectedplanet.net/en 

Mallet, P., Béchet, A., Sirami, C., Mesléard, F., Blanchon, T., Calatayud, F., Dagonet, T., Gaget, E., Leray, C., & Galewski, T. (2023). Field margins as substitute habitat for the conservation of birds in agricultural wetlands. bioRxiv, 2022.05.05.490780, ver. 3 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2022.05.05.490780 

Rigal, S., Dakos, V., Alonso, H., Auniņš, A., Benkő, Z., Brotons, L., Chodkiewicz, T., Chylarecki, P., de Carli, E., del Moral, J. C. et al. (2023). Farmland practices are driving bird population decline across Europe. Proceedings of the National Academy of Sciences, 120, e2216573120. https://doi.org/10.1073/pnas.2216573120 

Sabatini, F. M., Burrascano, S., Keeton, W. S., Levers, C., Lindner, M., Pötzschner, F., Verkerk, P. J., Bauhus, J., Buchwald, E., Chaskovsky, O., Debaive, N. et al. (2018). Where are Europe’s last primary forests? Diversity and Distributions, 24, 1426–1439. https://doi.org/10.1111/ddi.12778 

Venter, O., Sanderson, E. W., Magrach, A., Allan, J. R., Beher, J., Jones, K. R., Possingham, H. P., Laurance, W. F., Wood, P., Fekete, B. M., Levy, M. A., & Watson, J. E. M. (2016). Sixteen years of change in the global terrestrial human footprint and implications for biodiversity conservation. Nature Communications, 7, 12558. https://doi.org/10.1038/ncomms12558 

Field margins as substitute habitat for the conservation of birds in agricultural wetlandsMallet Pierre, Béchet Arnaud, Sirami Clélia, Mesléard François, Blanchon Thomas, Calatayud François, Dagonet Thomas, Gaget Elie, Leray Carole, Galewski Thomas<p style="text-align: justify;">Breeding birds in agricultural landscapes have declined considerably since the 1950s and the beginning of agricultural intensification in Europe. Given the increasing pressure on agricultural land, it is necessary t...Agroecology, Biodiversity, Conservation biology, Landscape ecologyAna S. L. Rodrigues2022-05-09 10:48:49 View
21 Jan 2025
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Exploring Rubiaceae fungal endophytes across contrasting tropical forests, tree tissues, and developmental stages

The hidden diversity of fungal endophytes, associated with Rubiaceae of Costa Rican old-growth forests

Recommended by based on reviews by Marion Boisseaux and 1 anonymous reviewer

Endophytic fungi are expected to be hyperdiverse in tropical forests, and here is an article exploring their diversity, hidden in Rubiaceae leaves, in two old-growth forests of Costa Rica. Humberto Castillo-González et al. not only described their diversity, but also test for the impact of leaf development stage, tissue origin, and site location. They distinguish the different fungal lineages and do identify distinct indicators, showing that specialization of endophytic fungi could be related to other factors in tropical forests.

This article is a great example of fungal ecology in the tropics, interacting at fine and large scale with a diversity of hosts. It also invites to discuss the high specialization observed in the tropics, and the ecology of old-growth forests in Costa Rica.

References

Humberto Castillo-González, Jason C. Slot, Stephanie Yarwood, Priscila Chaverri (2025) Exploring Rubiaceae fungal endophytes across contrasting tropical forests, tree tissues, and developmental stages. bioRxiv, ver.3 peer-reviewed and recommended by PCI Ecology https://doi.org/10.1101/2024.02.13.580172

Exploring Rubiaceae fungal endophytes across contrasting tropical forests, tree tissues, and developmental stagesHumberto Castillo-González, Jason C. Slot, Stephanie Yarwood, Priscila Chaverri<p>Fungal endophytes play a pivotal role in tropical forest dynamics, influencing plant fitness through growth stimulation, disease suppression, stress tolerance, and nutrient mobilization. This study investigates the effects of region, leaf devel...Agroecology, Biodiversity, Community ecology, Microbial ecology & microbiology, Mycology, SymbiosisMelanie Roy2024-02-15 22:42:10 View
17 Mar 2021
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Intra and inter-annual climatic conditions have stronger effect than grazing intensity on root growth of permanent grasslands

Resolving herbivore influences under climate variability

Recommended by based on reviews by 3 anonymous reviewers

We know that herbivory can have profound influences on plant communities with respect to their distribution and productivity (recently reviewed by Jia et al. 2018). However, the degree to which these effects are realized belowground in the rhizosphere is far less understood. Indeed, many independent studies and synthesis find that the environmental context can be more important than the direct effects of herbivore activity and its removal of plant biomass (Andriuzzi and Wall 2017, Schrama et al. 2013). In spite of dedicated attention, generalizable conclusions remain a bit elusive (Sitters and Venterink 2015). Picon-Cochard and colleagues (2021) help address this research conundrum in an elegant analysis that demonstrates the interaction between long-term cattle grazing and climatic variability on primary production aboveground and belowground. 

Over the course of two years, Picon-Cochard et al. (2021) measured above and belowground net primary productivity in French grasslands that had been subject to ten years of managed cattle grazing. When they compared these data with climatic trends, they find an interesting interaction among grazing intensity and climatic factors influencing plant growth.  In short, and as expected, plants allocate more resources to root growth in dry years and more to above ground biomass in wet and cooler years. However, this study reveals the degree to which this is affected by cattle grazing. Grazed grasslands support warmer and dryer soils creating feedback that further and significantly promotes root growth over green biomass production.  

The implications of this work to understanding the capacity of grassland soils to store carbon is profound. This study addresses one brief moment in time of the long trajectory of this grazed ecosystem. The legacy of grazing does not appear to influence soil ecosystem functioning with respect to root growth except within the environmental context, in this case, climate. This supports the notion that long-term research in animal husbandry and grazing effects on landscapes is deeded. It is my hope that this study is one of many that can be used to synthesize many different data sets and build a deeper understanding of the long-term effects of grazing and herd management within the context of a changing climate.  Herbivory has a profound influence upon ecosystem health and the distribution of plant communities (Speed and Austrheim 2017), global carbon storage (Chen and Frank 2020) and nutrient cycling (Sitters et al. 2020). The analysis and results presented by Picon-Cochard (2021) help to resolve the mechanisms that underly these complex effects and ultimately make projections for the future.

References

Andriuzzi WS, Wall DH. 2017. Responses of belowground communities to large aboveground herbivores: Meta‐analysis reveals biome‐dependent patterns and critical research gaps. Global Change Biology 23:3857-3868. doi: https://doi.org/10.1111/gcb.13675

Chen J, Frank DA. 2020. Herbivores stimulate respiration from labile and recalcitrant soil carbon pools in grasslands of Yellowstone National Park. Land Degradation & Development 31:2620-2634. doi: https://doi.org/10.1002/ldr.3656

Jia S, Wang X, Yuan Z, Lin F, Ye J, Hao Z, Luskin MS. 2018. Global signal of top-down control of terrestrial plant communities by herbivores. Proceedings of the National Academy of Sciences 115:6237-6242. doi: https://doi.org/10.1073/pnas.1707984115

Picon-Cochard C, Vassal N, Martin R, Herfurth D, Note P, Louault F. 2021. Intra and inter-annual climatic conditions have stronger effect than grazing intensity on root growth of permanent grasslands. bioRxiv, 2020.08.23.263137, version 6 peer-reviewed and recommended by PCI Ecology. doi: https://doi.org/10.1101/2020.08.23.263137

Schrama M, Veen GC, Bakker EL, Ruifrok JL, Bakker JP, Olff H. 2013. An integrated perspective to explain nitrogen mineralization in grazed ecosystems. Perspectives in Plant Ecology, Evolution and Systematics 15:32-44. doi: https://doi.org/10.1016/j.ppees.2012.12.001

Sitters J, Venterink HO. 2015. The need for a novel integrative theory on feedbacks between herbivores, plants and soil nutrient cycling. Plant and Soil 396:421-426. doi: https://doi.org/10.1007/s11104-015-2679-y

Sitters J, Wubs EJ, Bakker ES, Crowther TW, Adler PB, Bagchi S, Bakker JD, Biederman L, Borer ET, Cleland EE. 2020. Nutrient availability controls the impact of mammalian herbivores on soil carbon and nitrogen pools in grasslands. Global Change Biology 26:2060-2071. doi: https://doi.org/10.1111/gcb.15023

Speed JD, Austrheim G. 2017. The importance of herbivore density and management as determinants of the distribution of rare plant species. Biological Conservation 205:77-84. doi: https://doi.org/10.1016/j.biocon.2016.11.030

Intra and inter-annual climatic conditions have stronger effect than grazing intensity on root growth of permanent grasslandsCatherine Picon-Cochard, Nathalie Vassal, Raphaël Martin, Damien Herfurth, Priscilla Note, Frédérique Louault<p>Background and Aims: Understanding how direct and indirect changes in climatic conditions, management, and species composition affect root production and root traits is of prime importance for the delivery of carbon sequestration services of gr...Agroecology, Biodiversity, Botany, Community ecology, Ecosystem functioningJennifer Krumins2020-08-30 19:27:30 View
20 Feb 2024
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Functional trade-offs: exploring the temporal response of field margin plant communities to climate change and agricultural practices

Unravelling plant diversity in agricultural field margins in France: plant species better adapted to climate change need other agricultures to persist

Recommended by ORCID_LOGO based on reviews by Ignasi Bartomeus, Clélia Sirami and Diego Gurvich

Agricultural field margin plants, often referred to as “spontaneous” species, are key for the stabilization of several social-ecological processes related to crop production such as pollination or pest control (Tamburini et al. 2020). Because of its beneficial function, increasing the diversity of field margin flora becomes as important as crop diversity in process-based agricultures such as agroecology. Contrary, supply-dependent intensive agricultures produce monocultures and homogenized environments that might benefit their productivity, which generally includes the control or elimination of the field margin flora (Emmerson et al. 2016, Aligner 2018). Considering that different agricultural practices are produced by (and produce) different territories (Moore 2020) and that they are also been shaped by current climate change, we urgently need to understand how agricultural intensification constrains the potential of territories to develop agriculture more resilient to such change (Altieri et al., 2015). Thus, studies unraveling how agricultural practices' effects on agricultural field margin flora interact with those of climate change is of main importance, as plant strategies better adapted to such social-ecological processes may differ.        
 
In this vein, the study of Poinas et al. (2024) can be considered a key contribution. It exemplifies how agricultural intensification practiced in the context of climate change can constrain the potential of agricultural field margin flora to cope with climatic variations. The authors found that the incidence of plant strategies better adapted to climate change (conservative/stress-tolerant and Mediterranean species) increased with higher temperatures and lower soil moisture, and with lower intensity of margin management. In contrast, the incidence of ruderal species decreased with climate change. Thus, increasing or even maintaining current levels of agricultural intensification may affect the potential of French agriculture to move to sustainable process-based agricultures because of the reduction of plant diversity, particularly of vegetation better adapted to climate change. 
 
By using an impressive dataset spanning 9 years and 555 agricultural margins in continental France, Poinas et al. (2024) investigated temporal changes in climatic variables (temperature and soil moisture), agricultural practices (herbicide and fertilizers quantity, the frequency of margin mowing or grinding), plant taxonomical and functional diversity, plant strategies (Grime 1977, 1988) and relationships between these temporal changes. Temporal changes in plant strategies were associated with those observed in climatic variables and agricultural practices. Even such associations seem to be mediated by spatial changes, as described in the supplementary material and in their most recent article (Poinas et al. 2023), changes in climatic variables registered in a decade shaped plant strategies and therefore the diversity and functional potential of agricultural field margins. These results are clearly synthesized in Figures 6 and 7 of the present contribution.
 
As shown by Poinas et al. (2024), in the context of climate change, decreasing agricultural intensification will produce more diverse agricultural field margins by promoting the persistence of plant species better adapted to higher temperatures and lower soil moisture. Thus, adopting other agricultural practices (e.g., agroforestry, agroecology) will produce territories with a higher potential to move to sustainable processes-based agricultures that may better cope with climate change by harboring higher biocultural diversity (Altieri et al. 2015).

References

Alignier, A., 2018. Two decades of change in a field margin vegetation metacommunity as a result of field margin structure and management practice changes. Agric., Ecosyst. & Environ., 251, 1–10. https://doi.org/10.1016/j.agee.2017.09.013 

Altieri, M.A., Nicholls, C.I., Henao, A., Lana, M.A., 2015. Agroecology and the design of climate change-resilient farming systems. Agron. Sustain. Dev. 35, 869–890. https://doi.org/10.1007/s13593-015-0285-2

Emmerson, M., Morales, M. B., Oñate, J. J., Batary, P., Berendse, F., Liira, J., Aavik, T., Guerrero, I., Bommarco, R., Eggers, S., Pärt, T., Tscharntke, T., Weisser, W., Clement, L. & Bengtsson, J. (2016). How agricultural intensification affects biodiversity and ecosystem services. In Adv. Ecol. Res. 55, 43-97. https://doi.org/10.1016/bs.aecr.2016.08.005

Grime, J. P., 1977. Evidence for the existence of three primary strategies in plants and its relevance to ecological and evolutionary theory. The American Naturalist, 111(982), 1169–1194. https://doi.org/10.1086/283244

Grime, J. P., 1988. The C-S-R model of primary plant strategies—Origins, implications and tests. In L. D. Gottlieb & S. K. Jain, Plant Evolutionary Biology (pp. 371–393). Springer Netherlands. https://doi.org/10.1007/978-94-009-1207-6_14

Moore, J., 2020. El capitalismo en la trama de la vida (Capitalism in The Web of Life). Traficantes de sueños, Madrid, Spain. 

Poinas, I., Fried, G., Henckel, L., & Meynard, C. N., 2023. Agricultural drivers of field margin plant communities are scale-dependent. Bas. App. Ecol. 72, 55-63. https://doi.org/10.1016/j.baae.2023.08.003

Poinas, I., Meynard, C. N., Fried, G., 2024. Functional trade-offs: exploring the temporal response of field margin plant communities to climate change and agricultural practices, bioRxiv, ver. 4 peer-reviewed and recommended by Peer Community in Ecology. https://doi.org/10.1101/2023.03.03.530956

Tamburini, G., Bommarco, R., Wanger, T.C., Kremen, C., Van Der Heijden, M.G., Liebman, M., Hallin, S., 2020. Agricultural diversification promotes multiple ecosystem services without compromising yield. Sci. Adv. 6, eaba1715. https://doi.org/10.1126/sciadv.aba1715

Functional trade-offs: exploring the temporal response of field margin plant communities to climate change and agricultural practicesIsis Poinas, Christine N Meynard, Guillaume Fried<p style="text-align: justify;">Over the past decades, agricultural intensification and climate change have led to vegetation shifts. However, functional trade-offs linking traits responding to climate and farming practices are rarely analyzed, es...Agroecology, Biodiversity, Botany, Climate change, Community ecologyJulia Astegiano2023-03-04 15:40:35 View
07 Oct 2019
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Which pitfall traps and sampling efforts should be used to evaluate the effects of cropping systems on the taxonomic and functional composition of arthropod communities?

On the importance of experimental design: pitfall traps and arthropod communities

Recommended by ORCID_LOGO based on reviews by Cécile ALBERT and Matthias Foellmer

Despite the increasing refinement of statistical methods, a robust experimental design is still one of the most important cornerstones to answer ecological and evolutionary questions. However, there is a strong trade-off between a perfect design and its feasibility. A common mantra is that more data is always better, but how much is enough is complex to answer, specially when we want to capture the spatial and temporal variability of a given process. Gardarin and Valantin-Morison [1] make an effort to answer these questions for a practical case: How many pitfalls traps, of which type, and over which extent, do we need to detect shifts in arthropod community composition in agricultural landscapes. There is extense literature on how to approach these challenges using preliminary data in combination with simulation methods [e.g. 2], but practical cases are always welcomed to illustrate the complexity of the decisions to be made. A key challenge in this situation is the nature of simplified and patchy agricultural arthropod communities. In this context, small effect sizes are expected, but those small effects are relevant from an ecological point of view because small increases at low biodiversity may produce large gains in ecosystem functioning [3].
The paper shows that some variables are not important, such as the type of fluid used to fill the pitfall traps. This is good news for potential comparisons among studies using slightly different protocols. However, the bad news are that the sampling effort needed for detecting community changes is larger than the average effort currently implemented. A potential solution is to focus on Community Weighed Mean metrics (CWM; i.e. a functional descriptor of the community body size distribution) rather than on classic metrics such as species richness, as detecting changes on CWM requires a lower sampling effort and it has a clear ecological interpretation linked to ecosystem functioning.
Beyond the scope of the data presented, which is limited to a single region over two years, and hence it is hard to extrapolate to other regions and years, the big message of the paper is the need to incorporate statistical power simulations as a central piece of the ecologist's toolbox. This is challenging, especially when you face questions such as: Should I replicate over space, or over time? The recommended paper is accompanied by the statistical code used, which should facilitate this task to other researchers. Furthermore, we should be aware that some important questions in ecology are highly variable in space and time, and hence, larger sampling effort across space and time is needed to detect patterns. Larger and longer monitoring schemes require a large effort (and funding), but if we want to make relevant ecology, nobody said it would be easy.

References

[1] Gardarin, A. and Valantin-Morison, M. (2019). Which pitfall traps and sampling efforts should be used to evaluate the effects of cropping systems on the taxonomic and functional composition of arthropod communities? Zenodo, 3468920, ver. 3 peer-reviewed and recommended by PCI Ecology. doi: 10.5281/zenodo.3468920
[2] Johnson, P. C., Barry, S. J., Ferguson, H. M., and Müller, P. (2015). Power analysis for generalized linear mixed models in ecology and evolution. Methods in ecology and evolution, 6(2), 133-142. doi: 10.1111/2041-210X.12306
[3] Cardinale, B. J. et al. (2012). Biodiversity loss and its impact on humanity. Nature, 486(7401), 59-67. doi: 10.1038/nature11148

Which pitfall traps and sampling efforts should be used to evaluate the effects of cropping systems on the taxonomic and functional composition of arthropod communities?Antoine Gardarin and Muriel Valantin-Morison<p>1. Ground dwelling arthropods are affected by agricultural practices, and analyses of their responses to different crop management are required. The sampling efficiency of pitfall traps has been widely studied in natural ecosystems. In arable a...Agroecology, Biodiversity, Biological control, Community ecologyIgnasi Bartomeus2019-01-08 09:40:14 View